Evidence map›Paper›PMID 40781601›Full record

ArticleBMC genomic data2025

Draft genome sequence and annotation of the enfumafungin producing fungus Hormonema carpetanum ATCC 74360.

Haodong Chen, Junyi Wang, Songbai Yang, Jiawei Tang, Wen Tang, Shaoxin Chen

Abstract read
In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Haodong ChenNational Key Laboratory of Lead Druggability Research, China State Institute of Pharmaceutical Industry, Shanghai Institute of Pharmaceutical Industry, Shanghai, 201203, China.
Junyi WangNational Key Laboratory of Lead Druggability Research, China State Institute of Pharmaceutical Industry, Shanghai Institute of Pharmaceutical Industry, Shanghai, 201203, China.
Songbai YangNational Key Laboratory of Lead Druggability Research, China State Institute of Pharmaceutical Industry, Shanghai Institute of Pharmaceutical Industry, Shanghai, 201203, China.
Jiawei TangNational Key Laboratory of Lead Druggability Research, China State Institute of Pharmaceutical Industry, Shanghai Institute of Pharmaceutical Industry, Shanghai, 201203, China.
Wen TangNational Key Laboratory of Lead Druggability Research, China State Institute of Pharmaceutical Industry, Shanghai Institute of Pharmaceutical Industry, Shanghai, 201203, China.
Shaoxin ChenNational Key Laboratory of Lead Druggability Research, China State Institute of Pharmaceutical Industry, Shanghai Institute of Pharmaceutical Industry, Shanghai, 201203, China. sxzlb@263.net.

Funding

National Key Research and Development Program of China 2021YFC2102100Shanghai Sailing Program 23YF1445700
6 · The paper itself

Abstract

objectivesPlant endophytic fungusHormonema carpetanum is the only organism known to produce enfumafungin to date. Enfumafungin is a fernane-type triterpenoid glycoside compound with broad-spectrum antifungal activity, and this leading compound has been developed to antifungal agent ibrexafungerp approved by Food and Drug Administration (FDA). Here we report the first de novo assembled and annotated whole-genome sequence of H. carpetanum ATCC 74360, the original enfumafungin producing strain from the American Type Culture Collection (ATCC). DATA DESCRIPTION: We sequenced the genome of H. carpetanum ATCC 74360 through a hybrid sequencing strategy combining Illumina NovaSeq X Plus short-read and PacBio Sequel IIe long-read technologies. Data from the two platforms were combined and the de novo assembly estimated a 32.93 Mbp genome divided into 16 contigs with a GC content of 49.85%. Genome annotation identified 10,433 genes, 253 tRNAs, and 62 rRNAs. antiSMASH predicted biosynthesis gene cluster (BGC) of secondary metabolite, including enfumafungin BGC. This genome and related data files presented here will provide a foundation for further gene editing of this important antibiotic-producing microorganism.

Indexed as

AscomycotaGenome, FungalAntifungal AgentsMolecular Sequence AnnotationWhole Genome SequencingAntifungal AgentsBiosynthetic gene clusterEnfumafunginHormonema carpetanumIbrexafungerpSecondary metaboliteWhole genome sequencing

Identifiers

PMID40781601
PMCPMC12333168

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.