Evidence map›Paper›PMID 40781581›Full record

ArticleBMC genomics2025

Whole genome resequencing reveals genetic diversity, population structure, and selection signatures in local duck breeds.

Pengwei Ren, Yongdong Peng, Liu Yang, Muhammad Zahoor Khan, Yadi Jing, Chao Qi, Zhansheng Liu, Shuer Zhang, Nenzhu Zheng, Meixia Zhang and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Potential Genetic Markers Associated with Coloration in Duck: A Review.International journal of molecular sciences · 2025
    Review
4 · The record

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5 · Who and what money

Authors and funding

13 authors.

Pengwei RenCollege of Agricultural and Biology, Liaocheng University, Liaocheng, 252000, China.
Yongdong PengCollege of Agricultural and Biology, Liaocheng University, Liaocheng, 252000, China.
Liu YangCollege of Agricultural and Biology, Liaocheng University, Liaocheng, 252000, China.
Muhammad Zahoor KhanCollege of Agricultural and Biology, Liaocheng University, Liaocheng, 252000, China.
Yadi JingCollege of Agricultural and Biology, Liaocheng University, Liaocheng, 252000, China.
Chao QiShandong Animal Husbandry Station, Jinan, 250010, China.
Zhansheng LiuShandong Animal Husbandry Station, Jinan, 250010, China.
Shuer ZhangShandong Animal Husbandry Station, Jinan, 250010, China.
Nenzhu ZhengFujian Key Laboratory of Animal Genetics and Breeding, Institute of Animal Husbandry and Veterinary Medicine of Fujian Academy of Agricultural Sciences, Fuzhou, 350013, China.
Meixia ZhangCollege of Agricultural and Biology, Liaocheng University, Liaocheng, 252000, China.
Xiang LiuCollege of Agricultural and Biology, Liaocheng University, Liaocheng, 252000, China.
Zhiming ZhuFujian Key Laboratory of Animal Genetics and Breeding, Institute of Animal Husbandry and Veterinary Medicine of Fujian Academy of Agricultural Sciences, Fuzhou, 350013, China. zhuzm10203@163.com.
Mingxia ZhuCollege of Agricultural and Biology, Liaocheng University, Liaocheng, 252000, China. zhumingxia@lcu.edu.cn.

Funding

the Key R&D Program of Shandong Province, China 2024LZGC020, 2024LZGC002the National Student Innovation and Entrepreneurship Program 202410447021the Program of Fujian Key Laboratory of Animal Genetics and Breeding FJXQKFJJ2023the Shandong Province Livestock and Poultry Genetic Resources Preservation Farm and Gene Bank Protection Project K22LC0701，K23LC1301the University-level Student Innovation and Entrepreneurship Project CXCY310
6 · The paper itself

Abstract

backgroundShandong's local duck breeds are renowned for their outstanding egg-laying performance and are regarded as valuable assets within China's waterfowl germplasm. Understanding the genetic characteristics of these populations, along with monitoring and conserving their genetic diversity, is of paramount importance. In this study, we analyzed the genetic diversity, population structure, and genetic characteristic of 89 ducks, including the Weishan Partridge (WS, n = 30), Matahu (MT, n = 29), and Wendeng Black (WD, n = 30), using genome resequencing data. We also used a random forest model algorithm to identify specific breed-identification SNPs, ensuring accurate differentiation of the three breeds.

resultsThe findings of this study revealed that WS ducks exhibited higher genetic diversity compared to the other two breeds. This may be related to their larger group size and level of inbreeding. Notice that H

conclusionsThis study, utilizing genome sequencing data and machine learning algorithms, provides a comprehensive evaluation of the genetic resources of Shandong's local duck breeds. It highlights the distinct genetic characteristics of the three breeds, providing valuable insights and a theoretical foundation for the conservation and sustainable utilization of Shandong's local duck genetic resources.

Indexed as

DucksGenetic VariationSelection, GeneticWhole Genome SequencingAnimalsBreedingChinaGenetics, PopulationPhylogenyPolymorphism, Single NucleotideBreed identificationDuckPopulation genetic structureSelection signalsWhole genome resequencing

Identifiers

PMID40781581
PMCPMC12333207

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