Evidence map›Paper›PMID 40781232›Full record

ArticleNature communications2025

Development of a versatile chassis for the efficient production of diverse type II polyketides.

Yang Zou, Ronghui Wang, Zhengjie Liu, Yuyang Zou, Shipeng Zeng, Min Fang, Hongmei Chen, Pengfei Wang, Changxian Xie, Zixin Deng and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yang ZouDepartment of Urology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, Hubei Province, China.
Ronghui WangDepartment of Urology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, Hubei Province, China.
Zhengjie LiuState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Yuyang ZouState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Shipeng ZengDepartment of Urology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, Hubei Province, China.
Min FangDepartment of Urology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, Hubei Province, China.
Hongmei ChenJinhe Biotechnology Co., Ltd., Hohhot, China.
Pengfei WangJinhe Biotechnology Co., Ltd., Hohhot, China.
Changxian XieJinhe Biotechnology Co., Ltd., Hohhot, China.
Zixin DengState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.ORCID http://orcid.org/0000-0003-0724-3390
Fan ZhangDepartment of Urology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, Hubei Province, China. fzhang83@whu.edu.cn.ORCID http://orcid.org/0000-0001-9732-1123
Ran LiuState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China. l_ran@sjtu.edu.cn.ORCID http://orcid.org/0000-0002-9605-231X
Tiangang LiuDepartment of Urology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, Hubei Province, China. liutiangang@sjtu.edu.cn.ORCID http://orcid.org/0000-0001-8087-0345

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32100053National Natural Science Foundation of China (National Science Foundation of China) 82273826National Natural Science Foundation of China (National Science Foundation of China) U23A20527
6 · The paper itself

Abstract

Type II polyketides (T2PKs) exhibit a wide range of structural diversity and potent pharmacological activities. However, the optimal chassis for the synthesis of T2PKs remains elusive, impeding the effective mining and production of these compounds. In this study, we identify Streptomyces aureofaciens J1-022, a high-yield producer of chlortetracycline, as a promising chassis for T2PKs synthesis. To mitigate precursor competition, we execute an in-frame deletion of two endogenous T2PKs gene clusters, resulting in a pigmented-faded host, designated Chassis2.0. Compared to conventional Streptomyces chassis, Chassis2.0 demonstrates enhanced efficiency in the production of oxytetracycline, achieving a 370% increase relative to commercial production strains. Additionally, the tri-ring type T2PKs, which includes actinorhodin and flavokermesic acid, are synthesized in Chassis2.0 with high efficiency. Furthermore, an unidentified biosynthetic gene cluster (BGC) associated with pentangular T2PKs is directly activated, leading to the production of a structurally distinct TLN-1. In conclusion, we successfully achieve the efficient synthesis of tri-ring type pigmented products, the overproduction of tetra-ring antibiotics, and the discovery of penta-ring type polyketides in Chassis2.0. These findings underscore the potential of Chassis2.0 as an optimal platform for the discovery and overproduction of T2PKs.

Indexed as

Metabolic EngineeringPolyketidesStreptomycesAnthraquinonesAnti-Bacterial AgentsBiosynthetic PathwaysMultigene FamilyOxytetracyclineAnthraquinonesAnti-Bacterial AgentsOxytetracyclinePolyketides

Identifiers

PMID40781232
PMCPMC12334735

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.