Evidence map›Paper›PMID 40781193›Full record

ArticleNature cancer2025

SWIFT-seq enables comprehensive single-cell transcriptomic profiling of circulating tumor cells in multiple myeloma and its precursors.

Elizabeth D Lightbody, Romanos Sklavenitis-Pistofidis, Ting Wu, Junko Tsuji, Danielle T Firer, Michael P Agius, Ankit K Dutta, Hadley Barr, Sungjae Kim, Jean-Baptiste Alberge and 24 more

Abstract read
In one paragraph

Article in Nature cancer, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Trial
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Elizabeth D Lightbody *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Romanos Sklavenitis-Pistofidis *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Ting WuBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Junko TsujiBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Danielle T FirerBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Michael P AgiusDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-2356-4274
Ankit K DuttaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-2535-3729
Hadley BarrDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-0595-5984
Sungjae KimBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Jean-Baptiste AlbergeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4218-7294
Sarah NersesianDepartment of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada.
Tim CoorensBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5826-3554
Nicholas J HaradhvalaBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-1113-3135
Nang Kham SuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Cody J BoehnerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Michelle P AranhaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-8230-5726
Mahshid RahmatDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Yoshinobu KonishiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1212-7212
Laura HevenorDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Katherine TowleDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Erica HorowitzDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Jacqueline PerryDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Maya DavisDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Kelly A WalshDepartment of Orthopaedic Surgery, Brigham and Women's Hospital, Boston, MA, USA.
Christian J Cea-CurryDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Grace FlemingDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Michael E VinyardBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Daniel Heilpern-MalloryDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-4296-015X
Habib El-KhouryDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Annie CowanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
John E ReadyHarvard Medical School, Boston, MA, USA.
Catherine R MarinacDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Gad GetzHarvard Medical School, Boston, MA, USA. gadgetz@broadinstitute.org.ORCID http://orcid.org/0000-0002-0936-0753
Irene M GhobrialDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. irene_ghobrial@dfci.harvard.edu.ORCID http://orcid.org/0000-0001-7361-3092

Funding

Molecular Prediction of Myeloma Initiation Molecular Prediction of Myeloma InitiationR35CA263817 · NCI · DANA-FARBER CANCER INST · PI Irene M. Ghobrial · 2022 to 2026
$5.1M
Molecular prediction of myeloma in African AmericansU01CA271492 · NCI · DANA-FARBER CANCER INST · PI Catherine Marinac · 2022 to 2026
$4.3M
Regulation of the P13K/AKT pathway in Waldenstrom MacroglobulinemiaR21CA126119 · NCI · DANA-FARBER CANCER INST · PI GHOBRIAL, IRENE M. · 2007 to 2008
$643k
Repurposing Metformin for the Prevention of Disease Progression in Precursor Multiple MyelomaK22CA251648 · NCI · DANA-FARBER CANCER INST · PI MARINAC, CATHERINE · 2020 to 2022
$577k
NCI NIH HHS K22 CA251648NCI NIH HHS R21 CA126119NCI NIH HHS R35 CA263817NCI NIH HHS U01 CA271492
6 · The paper itself

Abstract

Multiple myeloma is a bone marrow (BM) plasma cell malignancy preceded by precursor conditions. BM biopsies are conducted infrequently and can yield inconclusive results due to technical limitations. Profiling circulating tumor cells (CTCs) may enable noninvasive routine clinical assessments but remains challenging. Here, to address this, we describe a single-cell sequencing workflow to interrogate few tumor cells (SWIFT-seq), and employ single-cell RNA sequencing and B cell receptor sequencing on paired BM and CTCs from 101 patients and healthy donors. We establish a sequencing-based CTC enumeration strategy and develop a CTC classifier to infer cytogenetic abnormalities. Additionally, we leverage expression profiling to measure tumor proliferative index in CTCs, and demonstrate that clonal dynamics can be captured in CTCs. Last, we propose a circulatory dynamics model whereby tumor burden, proliferation, cytogenetics and a circulatory capacity signature influence CTC burden. Overall, SWIFT-seq may advance blood-based myeloma diagnostics, surveillance and prognostication, and reveal biological mechanisms of tumor dissemination.

Indexed as

Gene Expression ProfilingMultiple MyelomaNeoplastic Cells, CirculatingSingle-Cell AnalysisTranscriptomeAgedBiomarkers, TumorFemaleHumansMaleMiddle AgedSequence Analysis, RNABiomarkers, Tumor

Identifiers

PMID40781193
PMCPMC13277320

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.