Evidence map›Paper›PMID 40780212›Full record

ArticleCancer cell2025

Comprehensive tumor-immune profiling reveals mediators of paradoxical immune sensitivity in sarcomatoid renal cell carcinoma.

Nicholas J Salgia, Adil Khan, Wilhelm M Aubrecht, Gavin C Twoey, Jacky Chow, Kristopher Attwood, Han Yu, Jessie L Chiello, Nathaniel Hansen, Brianna J Wasik and 21 more

Abstract read
In one paragraph

Article in Cancer cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Nicholas J SalgiaDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA; MD-PhD Program, University at Buffalo Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY 14263, USA.
Adil KhanDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Wilhelm M AubrechtDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Gavin C TwoeyDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Jacky ChowDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Kristopher AttwoodDepartment of Biostatistics & Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Han YuDepartment of Biostatistics & Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Jessie L ChielloDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA; Department of Gynecologic Oncology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Nathaniel HansenDivision of Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
Brianna J WasikDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Benjamin D MercierDepartment of Medical Oncology & Therapeutics Research, City of Hope Comprehensive Cancer Center, Duarte, CA 91010, USA.
Hedyeh EbrahimiDepartment of Medical Oncology & Therapeutics Research, City of Hope Comprehensive Cancer Center, Duarte, CA 91010, USA.
Luis MezaDepartment of Medical Oncology & Therapeutics Research, City of Hope Comprehensive Cancer Center, Duarte, CA 91010, USA; Department of Medicine, Yale University School of Medicine, New Haven, CT 06510, USA.
Orla MaguireFlow and Immune Analysis Shared Resource, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Michalis MastriDepartment of Cancer Genetics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Cassandra WhalenPathology Network Shared Resource, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Hans MindermanFlow and Immune Analysis Shared Resource, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Patrick PirrotteDivision of Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
Sara ByronBioinnovation and Genome Sciences Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
Elizabeth A RepaskyDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Prashant K SinghGenomics Shared Resource, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Wiam BsharaDepartment of Pathology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Jianmin WangDepartment of Biostatistics & Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
A J Robert McGrayDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA; Department of Gynecologic Oncology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Scott I AbramsDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Bo XuDepartment of Pathology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Kevin H EngDepartment of Biostatistics & Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA; Department of Cancer Genetics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Mark D LongDepartment of Biostatistics & Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Sumanta K PalDepartment of Medical Oncology & Therapeutics Research, City of Hope Comprehensive Cancer Center, Duarte, CA 91010, USA.
Eric C KauffmanDepartment of Cancer Genetics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA; Department of Urology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA. Electronic address: eric.kauffman@roswellpark.org.
Jason B MuhitchDepartment of Immunology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA. Electronic address: jason.muhitch@roswellpark.org.

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI CANDACE S JOHNSON · 1985 to 2026
$116.6M
MULTIDISCIPLINARY APPROACHES TUMOR IMMUNOLOGYT32CA085183 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Scott I. Abrams · 2001 to 2026
$3.1M
Associate-Director Flow and Image Cytometry Roswell Park ComprehensiveCancer CenterR50CA211108 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI HANS MINDERMAN · 2016 to 2026
$3.0M
Targeted Gene Delivery and Human Dendritic Cell Maturation Through a Novel Hybrid Biological-Biomaterial Vector SystemR01CA270155 · NCI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI Jason B Muhitch, Blaine A. Pfeifer · 2023 to 2026
$1.9M
Director Genomics Shared ResourceR50CA283805 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Prashant Kumar Singh · 2024 to 2026
$708k
NCI NIH HHS P30 CA016056NCI NIH HHS R01 CA270155NCI NIH HHS R50 CA211108NCI NIH HHS R50 CA283805NCI NIH HHS T32 CA085183
6 · The paper itself

Abstract

Renal cell carcinoma with sarcomatoid features (sRCC) is a highly aggressive tumor type yet preferentially responds to immune checkpoint blockade (ICB). To better understand microenvironmental mediators of this paradoxical immune sensitivity, we performed single-cell analyses of human sRCC tumors compared against clear cell RCC (ccRCC), with validation spatially and in bulk transcriptomic datasets totaling over 3,000 RCC tumors. We describe a robust immune network in sRCC using these orthogonal approaches: tumor-infiltrating T cells in sRCC are more activated, and subsequently exhausted, while being enriched for CXCL13 expression. Congruently, tertiary lymphoid structures are pervasive in sRCC, paralleling functional enrichment of humoral immune activity. Tumor clone analysis revealed increased iron-associated programs in sRCC, presenting a potential vulnerability. We furthermore leveraged the paradoxical biology of sRCC to derive a genomic dedifferentiation signature (GDS) that, while negatively prognostic, identifies patients most likely to benefit from ICB across cohorts and tumor types.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsChemokine CXCL13Gene Expression ProfilingGene Expression Regulation, NeoplasticHumansImmune Checkpoint InhibitorsLymphocytes, Tumor-InfiltratingPrognosisSingle-Cell AnalysisTranscriptomeTumor MicroenvironmentChemokine CXCL13CXCL13 protein, humanImmune Checkpoint Inhibitorsanti-tumor immunityhumoral immunityimmune checkpoint blockadeimmune repertoirepredictive biomarkerrenal cell carcinomasarcomatoidsingle cell RNA sequencingspatial transcriptomicstertiary lymphoid structure

Identifiers

PMID40780212
PMCPMC12338066

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.