Evidence map›Paper›PMID 40780182›Full record

ArticleMolecular cell2025

Integrator promotes the association of TFIID and RNA polymerase II to maintain pluripotency during development.

Raghu Ram Edupuganti, Felipe Beckedorff, Pradeep Kumar Reddy Cingaram, Saeid Mohammad Parast, Jingyin Yue, Gary LeRoy, Monica Guiselle Valencia, Sadat Dokaneheifard, Helena Gomes Dos Santos, Omar Lopez Ocejo and 9 more

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. The molecular basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2026
    Review
  2. Review
  3. Review
  4. Maternal IntS11 primes embryonic totipotency by organizing early zygotic transcription initiation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Raghu Ram EdupugantiUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Felipe BeckedorffUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Pradeep Kumar Reddy CingaramUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Saeid Mohammad ParastSimpson Querrey Institute for Epigenetics and the Department of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Jingyin YueUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Gary LeRoyUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Monica Guiselle ValenciaUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Sadat DokaneheifardUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Helena Gomes Dos SantosUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Omar Lopez OcejoUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Mingjiang XuDepartment of Molecular Medicine, the University of Texas Health Science Center at San Antonio, San Antonio, TX 78229-3904, USA.
Brooke A DeRosaJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Department of Genetics, University of Miami Miller School of Medicine, Miami, FL, USA.
Derek M DykxhoornJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Department of Genetics, University of Miami Miller School of Medicine, Miami, FL, USA.
Guilherme Miura LavezzoInformation Technology Consulting LTD, Rua Major Sampaio, 65, São Paulo, São Paulo 02035-000, Brazil.
Daniel BilbaoUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Pathology and Laboratory Medicine, Miami, FL 33136, USA.
Danny ReinbergUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Lluis MoreyUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA.
Ali ShilatifardSimpson Querrey Institute for Epigenetics and the Department of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Ramin ShiekhattarUniversity of Miami Miller School of Medicine, Sylvester Comprehensive Cancer Center, Department of Human Genetics, 1501 NW 10(th) Avenue, Miami, FL 33136, USA. Electronic address: rshiekhattar@med.miami.edu.

Funding

Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephen D. Nimer · 2019 to 2026
$24.1M
Elucidation of Integrator's FunctionR01GM078455 · NIGMS · WISTAR INSTITUTE · PI SHIEKHATTAR, RAMIN · 2010 to 2025
$5.1M
NCI NIH HHS P30 CA240139NIGMS NIH HHS R01 GM078455
6 · The paper itself

Abstract

The mechanisms by which the expression of pluripotency and Polycomb networks are harmonized to allow the transition from pluripotency to a differentiated state have not been fully elucidated. Integrator complex regulates transcription pause release and RNA processing in metazoans. We show that Integrator is required for stemness and plays a critical role as early as day 2 in embryonic development. While the catalytic endonuclease activity enhances cellular reprogramming, Integrator recruits RNA polymerase II (RNAPII) to promoters and super enhancers of pluripotency and Polycomb genes. Integrator coordinates expression of pluripotency and Polycomb networks by fostering the association of RNAPII and basal transcription factors. We pinpoint a critical role for TATA-binding protein-associated factors (TAFs) in Integrator entry into the preinitiation complex. Taken together, beyond its role in RNAPII pause release, Integrator recruitment of RNAPII ensures an orderly cellular differentiation during development.

Indexed as

Embryonic DevelopmentMouse Embryonic Stem CellsPluripotent Stem CellsRNA Polymerase IITranscription Factor TFIIDAnimalsCell DifferentiationGene Expression Regulation, DevelopmentalHumansMicePolycomb-Group ProteinsPromoter Regions, GeneticTATA-Binding Protein Associated FactorsTranscription, GeneticPolycomb-Group ProteinsRNA Polymerase IITATA-Binding Protein Associated FactorsTranscription Factor TFIIDbasal transcription factorscellular differentiationdevelopmentembryonic stem cellsenhancerIntegratorpluripotencypromoterRNA polymerase II recruitmenttranscription

Identifiers

PMID40780182
PMCPMC12414571

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.