Evidence map›Paper›PMID 40778146›Full record

ArticlemedRxiv : the preprint server for health sciences2025

UShER-TB: Scalable, Comprehensive, Accessible Phylogenomic Analysis of

Lily M Karim, Francisco José Martínez-Martínez, Ash O'Farrell, Angie S Hinrichs, Theo Sanderson, Zamin Iqbal, Varvara K Kozyreva, John M Bell, Mariana G López, Iñaki Comas and 1 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lily M KarimDepartment of Biomolecular Engineering, University of California, Santa Cruz.ORCID 0000-0002-4972-7513
Francisco José Martínez-MartínezTuberculosis Genomics Unit, Instituto de Biomedicina de Valencia (IBV), CSIC, Spain.ORCID 0000-0001-9143-9278
Ash O'FarrellGenomics Institute, University of California, Santa Cruz.ORCID 0000-0003-4896-1858
Angie S HinrichsGenomics Institute, University of California, Santa Cruz.ORCID 0000-0002-1697-1130
Theo SandersonDepartment of Infection Biology, London School of Hygiene and Tropical Medicine, London, UK.ORCID 0000-0003-4177-2851
Zamin IqbalMilner Centre for Evolution, University of Bath, UK.ORCID 0000-0001-8466-7547
Varvara K KozyrevaMicrobial Diseases Laboratory, Infectious Disease Laboratory Division, California Department of Public Health, Richmond, CA.ORCID 0000-0003-3447-0070
John M BellMicrobial Diseases Laboratory, Infectious Disease Laboratory Division, California Department of Public Health, Richmond, CA.
Mariana G LópezTuberculosis Genomics Unit, Instituto de Biomedicina de Valencia (IBV), CSIC, Spain.
Iñaki ComasTuberculosis Genomics Unit, Instituto de Biomedicina de Valencia (IBV), CSIC, Spain.ORCID 0000-0001-5504-9408
Russell Corbett-DetigDepartment of Biomolecular Engineering, University of California, Santa Cruz.

Funding

UCSC Graduate Program in Genome SciencesT32HG012344 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Angela Norie Brooks, Christopher Vollmers · 2022 to 2026
$1.5M
NCEZID CDC HHS U01 CK000539NHGRI NIH HHS T32 HG012344Wellcome Trust
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

PMID40778146
PMCPMC12330463

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.