Evidence map›Paper›PMID 40777339›Full record

ArticlebioRxiv : the preprint server for biology2025

Growth Cost and Transport Efficiency Tradeoffs Define Root System Optimization Across Varying Developmental Stages and Environments in Arabidopsis.

Kian Faizi, Preyanka Mehta, Amy Maida, Taylor Humphreys, Elizabeth Berrigan, Leo McKee Reid, Robbie McCorkell, Arush Tagade, Jessica Rumbelow, Julia Showalter and 10 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Kian FaiziSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Preyanka MehtaSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Amy MaidaSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Taylor HumphreysSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Elizabeth BerriganSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Leo McKee ReidLeap Laboratories, London, United Kingdom.
Robbie McCorkellLeap Laboratories, London, United Kingdom.
Arush TagadeLeap Laboratories, London, United Kingdom.
Jessica RumbelowLeap Laboratories, London, United Kingdom.
Julia ShowalterSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Lukas BrentSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Clementine CoroenneIPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, 34060, Montpellier, France.
Audrey RigaudSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Arjun ChandrasekharDepartment of Computer Science, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Saket NavlakhaSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Antoine MartinIPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, 34060, Montpellier, France.
Christophe PradalCIRAD, UMR AGAP Institut, 34398 Montpellier, France.ORCID 0000-0002-2555-761X
Sanghwa LeeSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.
Wolfgang BuschSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.ORCID 0000-0003-2042-7290
Matthieu Pierre PlatreSalk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA.ORCID 0000-0002-4934-3050

Funding

Molecular Signal Integration for Root Growth ControlR01GM127759 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Wolfgang Busch · 2018 to 2026
$3.2M
NIGMS NIH HHS R01 GM127759
6 · The paper itself

Abstract

Root system architecture (RSA) is central to plant adaptation and fitness, yet the design principles and regulatory mechanisms connecting RSA to environmental adaptation are not well understood. We developed Ariadne, a semi-automated software for quantifying cost-efficiency tradeoffs of RSA by mapping root networks onto a Pareto-optimality framework, which describes the balance between resource transport efficiency and construction cost. Applying Ariadne to

Identifiers

PMID40777339
PMCPMC12330678

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.