Evidence map›Paper›PMID 40775527›Full record

ArticleNature structural & molecular biology2025

Core splicing architecture and early spliceosomal recognition determine microexon sensitivity to SRRM3/4.

Sophie Bonnal, Simon Bajew, Rosa Martinez-Corral, Manuel Irimia

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sophie BonnalCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain. sophie.bonnal@crg.eu.ORCID http://orcid.org/0000-0001-6096-3042
Simon BajewCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Rosa Martinez-CorralCRG (Barcelona Collaboratorium for Modelling and Predictive Biology), Barcelona, Spain.
Manuel IrimiaCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain. mirimia@gmail.com.ORCID http://orcid.org/0000-0002-2179-2567

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microexons are essential for the proper operation of neurons and pancreatic endocrine cells, in which their inclusion depends on the splicing factors SRRM3 and SRRM4 (SRRM3/4). However, in pancreatic cells, lower expression of these regulators limits inclusion to only the most sensitive subset among all neuronal microexons. Although various cis-acting elements can contribute to microexon regulation, how they determine this differential dose response and the corresponding high or low sensitivity to SRRM3/4 remains unknown. Here we use massively parallel splicing assays probing 28,535 variants to show that sensitivity to SRRM4 is conserved across vertebrates. Our data support a regulatory model whereby high or low microexon sensitivity is largely determined by the interplay between core splicing architecture and length constraints. This conclusion is further supported by distinct spliceosome activities in the absence of SRRM3/4 and by a mathematical model that assumes that the two types of microexons differ only in their efficiency to recruit early spliceosomal components.

Indexed as

ExonsNerve Tissue ProteinsRNA-Binding ProteinsRNA SplicingSpliceosomesAnimalsHumansMiceRNA Splicing FactorsNerve Tissue ProteinsRNA-Binding ProteinsRNA Splicing FactorsSRRM4 protein, human

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.