Evidence map›Paper›PMID 40775512›Full record

ArticleScientific reports2025

Identification and validation of hub genes related to neutrophil extracellular traps-mediated cell damage and immune recruitment during abdominal aortic aneurysm.

Chuanlong Lu, Heng Wang, Maolin Qiao, Runze Chang, Jinshan Chen, Lizheng Li, Keyi Fan, Sheng Yan, Ruijing Zhang, Honglin Dong

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chuanlong Lu *Department of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China.
Heng Wang *Department of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China.
Maolin QiaoDepartment of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China.
Runze ChangDepartment of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China.
Jinshan ChenDepartment of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China.
Lizheng LiDepartment of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China.
Keyi FanDepartment of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China.
Sheng YanDepartment of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China.
Ruijing ZhangDepartment of Nephrology, The Second Hospital of Shanxi Medical University, Taiyuan, China. 15035180085@163.com.
Honglin DongDepartment of Vascular Surgery, The Second Hospital, Shanxi Medical University, Taiyuan, 030001, PR China. honglindong@sxmu.edu.cn.

Funding

Construction and demonstration of molecular diagnosis and treatment platform for vascular diseases in Shanxi Province No. SCP-2023-17The Leading Talent Team Building Program of Shanxi Province, China No. 202204051002010The National Natural Science Foundation of China No. 81770695, 81870354the Regional Cooperation Program of Shanxi Province, China No. 202204041101038The Shanxi Provincial Science and Technology Department Centralized Guided Local Projects No. YDZJSX2021C026Translational Medicine Engineering Research Center for Vascular Diseases of Shanxi Province No. 2022017
6 · The paper itself

Abstract

Previous research has shown that the formation of Neutrophil Extracellular Traps (NETs), mediated by neutrophils, leads to an increase in inflammatory cell response and cellular tissue damage during Abdominal Aortic Aneurysm (AAA). Building on this foundation, our primary objective is to identify and validate potential hub genes involved in NETs-mediated intrinsic cellular damage and the recruitment process of immune cells. We performed an analysis on the infiltration of immune cells within the AAA transcriptome dataset, employing CIBERSORT and ssGSEA algorithms (GSE183464). Next, the gene expression patterns associated with NETs formation (GSE178883) were utilized to examine the physiological processes in peripheral blood neutrophils post-PMA (Phorbol 12-myristate 13-acetate) induction. Subsequently, utilizing bioinformatics and machine learning algorithms, candidate crucial genes were identified within NETs-related genes and transcriptome datasets (GSE179828, GSE145200, GSE161464, GSE57691, GSE232911 and GSE166676). Following this, receiver operating characteristic curves were created to evaluate the diagnostic significance of these essential genes. Furthermore, the correlation between pivotal genes and immune cells was then examined using CIBERSORT and ssGSEA algorithms. By using weighted gene co-expression network analysis and machine learning algorithms, we ultimately identified 9 hub genes (MMP9, CXCR4, CYBB, TNFAIP3, PIK3CD, LTB, CXCL13, SELL, STAT4). Finally, gene expression was verified using immunohistochemistry, immunofluorescence, and enzyme-linked immunosorbent assay methods. We have identified nine hub genes related to neutrophil-mediated intrinsic cellular damage and the recruitment of immune cells in AAA. These findings could offer clues to the cellular mechanisms mediated by neutrophils in the progression of AAA.

Indexed as

Aortic Aneurysm, AbdominalExtracellular TrapsNeutrophilsComputational BiologyGene Expression ProfilingGene Regulatory NetworksHumansTranscriptomeAbdominal aortic aneurysmBioinformatics analysisCell damageImmune activationMachine learning

Identifiers

PMID40775512
PMCPMC12331970

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