Evidence map›Paper›PMID 40775219›Full record

ArticleNature communications2025

Integrative multi-omics reveals a regulatory and exhausted T-cell landscape in CLL and identifies galectin-9 as an immunotherapy target.

L Llaó-Cid, Jkl Wong, I Fernandez Botana, Y Paul, M Wierz, L-M Pilger, A Floerchinger, C L Tan, S Gonder, G Pagano and 22 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
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  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. CCL19bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Advancing Immunotherapy in Chronic Lymphocytic Leukemia.International journal of molecular sciences · 2026
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

L Llaó-Cid *Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0003-0543-6084
Jkl Wong *Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.
I Fernandez BotanaTumor Stroma Interactions, Department of Cancer Research, Luxembourg Institute of Health, Luxembourg, Luxembourg.
Y PaulDivision of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-2312-2954
M WierzTumor Stroma Interactions, Department of Cancer Research, Luxembourg Institute of Health, Luxembourg, Luxembourg.
L-M PilgerDivision of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.
A FloerchingerDivision of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.
C L TanCCU Neuroimmunology and Brain Tumor Immunology, German Cancer Research Center, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-2529-1030
S GonderTumor Stroma Interactions, Department of Cancer Research, Luxembourg Institute of Health, Luxembourg, Luxembourg.
G PaganoTumor Stroma Interactions, Department of Cancer Research, Luxembourg Institute of Health, Luxembourg, Luxembourg.
M ChazotteInstitute for Computational Biomedicine, Faculty of Medicine, Heidelberg University and Heidelberg University Hospital, Heidelberg, Germany.ORCID http://orcid.org/0009-0007-4901-5173
K BestakInstitute for Computational Biomedicine, Faculty of Medicine, Heidelberg University and Heidelberg University Hospital, Heidelberg, Germany.ORCID http://orcid.org/0009-0009-8245-9846
C SchifflersDivision of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-2266-8621
M IskarDivision of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0001-8603-4313
T RoiderDepartment of Internal Medicine V, Hematology, Oncology and Rheumatology, University Hospital Heidelberg, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-6973-3531
F CzernilofskyDepartment of Internal Medicine V, Hematology, Oncology and Rheumatology, University Hospital Heidelberg, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-5868-2890
P-M BruchDepartment of Internal Medicine V, Hematology, Oncology and Rheumatology, University Hospital Heidelberg, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-9992-3109
J P MallmscOpenLab, German Cancer Research Center, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-7059-4030
A CosmaNational Cytometry Platform, Luxembourg Institute of Health, Luxembourg, Luxembourg.ORCID http://orcid.org/0000-0002-3686-8034
D E CamptonRareCyte, Seattle, WA, USA.
E Gerhard-HartmannInstitute for Pathology, University of Würzburg, Würzburg, Germany.
A RosenwaldInstitute for Pathology, University of Würzburg, Würzburg, Germany.
D ColomerInstitut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Hematopathology Unit, Hospital Clinic, CIBERONC, Barcelona, Spain.ORCID http://orcid.org/0000-0001-7486-8484
E CampoInstitut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Hematopathology Unit, Hospital Clinic, CIBERONC, Barcelona, Spain.ORCID http://orcid.org/0000-0001-9850-9793
D SchapiroInstitute for Computational Biomedicine, Faculty of Medicine, Heidelberg University and Heidelberg University Hospital, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-9391-5722
E W GreenCCU Neuroimmunology and Brain Tumor Immunology, German Cancer Research Center, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-1922-2298
S DietrichDepartment of Internal Medicine V, Hematology, Oncology and Rheumatology, University Hospital Heidelberg, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-0648-1832
P LichterDivision of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.
E Moussay *Tumor Stroma Interactions, Department of Cancer Research, Luxembourg Institute of Health, Luxembourg, Luxembourg.ORCID http://orcid.org/0000-0002-0879-8067
J Paggetti *Tumor Stroma Interactions, Department of Cancer Research, Luxembourg Institute of Health, Luxembourg, Luxembourg.ORCID http://orcid.org/0000-0001-9460-5876
M Zapatka *Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0001-8287-5967
M Seiffert *Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany. m.seiffert@dkfz.de.ORCID http://orcid.org/0000-0001-5155-663X

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) INST 35/1597-1 FUGGDeutsche Krebshilfe (German Cancer Aid) 70114114"la Caixa" Foundation (Caixa Foundation) CLLSYSTEMS LCF/PR/HR22/52420015 (HR22-00172)
6 · The paper itself

Abstract

T-cell exhaustion contributes to immunotherapy failure in chronic lymphocytic leukemia (CLL). Here, we analyze T cells from CLL patients' blood, bone marrow, and lymph nodes, as well as from a CLL mouse model, using single-cell RNA sequencing, mass cytometry, and tissue imaging. T cells in CLL lymph nodes show the most distinct profiles, with accumulation of regulatory T cells and CD8

Indexed as

GalectinsLeukemia, Lymphocytic, Chronic, B-CellT-Lymphocytes, RegulatoryAnimalsCD8-Positive T-LymphocytesDisease Models, AnimalFemaleHepatitis A Virus Cellular Receptor 2HumansImmunotherapyLymph NodesMaleMiceMultiomicsgalectin 9, mouseGalectinsHAVCR2 protein, humanHepatitis A Virus Cellular Receptor 2LGALS9 protein, human

Identifiers

PMID40775219
PMCPMC12331977

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.