Evidence map›Paper›PMID 40772758›Full record

ArticleApplied and environmental microbiology2025

Distinct shifts in bacteriophage diversity and abundance during various stages of Gouda-type cheese production.

Jun-Hyeok Yu, Gabriele Andrea Lugli, Marco Ventura, Roel van der Vaart, Arjen Nauta, Jennifer Mahony, Douwe van Sinderen

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Members of theMicrobial genomics · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jun-Hyeok YuSchool of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.ORCID 0000-0002-6477-0544
Gabriele Andrea LugliDepartment of Chemistry, Life Sciences and Environmental Sustainability, Laboratory of Probiogenomics, University of Parma, Parma, Italy.ORCID 0000-0002-3024-0537
Marco VenturaDepartment of Chemistry, Life Sciences and Environmental Sustainability, Laboratory of Probiogenomics, University of Parma, Parma, Italy.ORCID 0000-0002-4875-4560
Roel van der VaartFrieslandCampina, Amersfoort, the Netherlands.
Arjen NautaFrieslandCampina, Amersfoort, the Netherlands.
Jennifer MahonySchool of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.ORCID 0000-0001-5846-6303
Douwe van SinderenSchool of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.ORCID 0000-0003-1823-7957

Funding

Irish Research Council EPSPG/2020/42Science Foundation Ireland 12/RC/2273-P2Science Foundation Ireland 20/FFP-P/8864
6 · The paper itself

Abstract

Bacteriophage (or phage) infection is known to disrupt milk fermentation processes involving lactic acid bacteria (LAB). This highlights the need to understand the dynamics of phage infection, particularly in fermentations involving undefined complex starter cultures, where conventional phage detection methodologies that rely on host bacteria come with limitations. Here, a metagenomic approach combined with microbiological methods was employed to assess the presence, diversity, and compositional changes in lactococcal phages within an industrial cheese production process. The virome data sets of ingredients and samples taken at various stages of the fermentation process were analyzed, revealing 12 presumptive lactococcal phage genomes belonging to either the

Indexed as

BacteriophagesCheeseLactococcusFermentationFood MicrobiologyGenome, ViralPhylogenyViromebacteriophagecell wall polysaccharidesfermentationlactococcusmetagenomics

Identifiers

PMID40772758
PMCPMC12442387

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.