Evidence map›Paper›PMID 40770194›Full record

ArticleNature communications2025

Functional interplay between condensin I and topoisomerase Iiα in single-molecule DNA compaction.

Yuko Tsubota, Keishi Shintomi, Kazuhisa Kinoshita, Yuki Masahara-Negishi, Yuuki Aizawa, Masami Shima, Tatsuya Hirano, Tomoko Nishiyama

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Histone Density and Dynamics Shape Mitotic Chromatid Architecture in Xenopus Egg Extracts.Genes to cells : devoted to molecular & cellular mechanisms · 2026
    Article
  3. Article
  4. Mitotic genome folding.The Journal of cell biology · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Yuko TsubotaGenome Integrity and Control Laboratory, Division of Biology, Graduate School of Science, Kyoto University, Sakyo, Kyoto, Japan.
Keishi ShintomiChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.ORCID http://orcid.org/0000-0003-0484-9901
Kazuhisa KinoshitaChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.ORCID http://orcid.org/0000-0002-0882-4296
Yuki Masahara-NegishiChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.
Yuuki AizawaChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.ORCID http://orcid.org/0000-0002-5002-7557
Masami ShimaChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.
Tatsuya HiranoChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan. hiranot@riken.jp.ORCID http://orcid.org/0000-0002-4219-6473
Tomoko NishiyamaGenome Integrity and Control Laboratory, Division of Biology, Graduate School of Science, Kyoto University, Sakyo, Kyoto, Japan. tomoko.nishiyama@biophys.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-8349-6536

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 18H05276MEXT | Japan Society for the Promotion of Science (JSPS) 20H05933MEXT | Japan Society for the Promotion of Science (JSPS) 20H05937MEXT | Japan Society for the Promotion of Science (JSPS) 20H05938MEXT | Japan Society for the Promotion of Science (JSPS) 22H02551
6 · The paper itself

Abstract

Condensin I and topoisomerase IIα (topo IIα) are chromosomal ATPases essential for mitotic chromosome assembly. Mechanistically how the two ATPases cooperate to assemble mitotic chromosomes remains unknown. Here we investigate the interplay between condensin I and topo IIα at single-molecule resolution. While condensin I alone exhibits ATP-dependent DNA loop formation, it generates stable, compact structures ("lumps") in the presence of topo IIα in a manner dependent on its C-terminal domain. These lumps predominantly contain a single condensin I complex and a single topo IIα dimer. The strand passage activity of topo IIα introduces DNA knots within the lumps, rendering them resistant to protease treatment. An ATP hydrolysis-deficient mutant of condensin I forms smaller lumps, in which the probability of DNA knotting is markedly reduced. Our findings demonstrate that topo IIα-mediated strand passage is functionally coupled with condensin I-mediated loop extrusion, providing insights into the mechanism underlying mitotic chromosome assembly.

Indexed as

Adenosine TriphosphatasesAntigens, NeoplasmDNADNA-Binding ProteinsDNA Topoisomerases, Type IIMultiprotein ComplexesAdenosine TriphosphateHumansMitosisNucleic Acid ConformationAdenosine TriphosphatasesAdenosine TriphosphateAntigens, Neoplasmcondensin complexesDNADNA-Binding ProteinsDNA Topoisomerases, Type IIMultiprotein Complexes

Identifiers

PMID40770194
PMCPMC12328728

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.