Evidence map›Paper›PMID 40770113›Full record

ArticleNature structural & molecular biology2025

Structure of the TXNL1-bound proteasome.

Jingjing Gao, Christopher Nardone, Matthew C J Yip, Haruka Chino, Xin Gu, Zachary Mirman, Michael J Rale, Joao A Paulo, Stephen J Elledge, Sichen Shao

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Disulphide maintenance systems and proteostasis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. V-ATPase assembly at leaky lysosomes.Nature structural & molecular biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jingjing Gao *Department of Cell Biology, Harvard Medical School, Boston, MA, USA.
Christopher Nardone *Department of Genetics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-1705-5310
Matthew C J Yip *Department of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-2505-9987
Haruka ChinoDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Xin GuDepartment of Neurobiology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-3393-6927
Zachary MirmanDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Michael J RaleDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Joao A PauloDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4291-413X
Stephen J ElledgeDepartment of Genetics, Harvard Medical School, Boston, MA, USA. selledge@genetics.med.harvard.edu.ORCID http://orcid.org/0000-0001-7923-6283
Sichen ShaoDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA. sichen_shao@hms.harvard.edu.ORCID http://orcid.org/0000-0003-2679-5537

Funding

Ubiquitin Mediated Proteolysis and Cell Cycle ControlR01AG011085 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JEFFREY W HARPER · 1993 to 2026
$10.9M
Quality control of mislocalized membrane proteinsR01AG073277 · NIA · HARVARD MEDICAL SCHOOL · PI Sichen Shao · 2022 to 2026
$1.7M
Advancing Multiplexed Isobaric Tag-based Strategies for Proteome ProfilingR01GM132129 · NIGMS · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2019 to 2023
$1.7M
Developing proteomics pipelines to improve depth, throughput, and accuracyR35GM156406 · NIGMS · HARVARD MEDICAL SCHOOL · PI Joao A Paulo · 2025 to 2026
$878k
NIA NIH HHS R01 AG011085NIA NIH HHS R01 AG073277NIGMS NIH HHS R01 GM132129NIGMS NIH HHS R35 GM156406
6 · The paper itself

Abstract

Proteasomes degrade diverse proteins in different cellular contexts through incompletely defined regulatory mechanisms. Here we report the cryo-EM structure of human thioredoxin-like protein 1 (TXNL1) bound to the 19S regulatory particle of proteasomes via interactions with PSMD1 (Rpn2), PSMD4 (Rpn10) and PSMD14 (Rpn11). Proteasome binding is necessary for the ubiquitin-independent degradation of TXNL1 upon cellular exposure to metal- or metalloid-containing oxidative agents, thereby establishing a structural requirement for the stress-induced degradation of TXNL1.

Indexed as

Proteasome Endopeptidase ComplexThioredoxinsCryoelectron MicroscopyHumansModels, MolecularProtein BindingProteolysisProteasome Endopeptidase ComplexThioredoxins

Identifiers

PMID40770113
PMCPMC12700798

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.