Evidence map›Paper›PMID 40770045›Full record

ArticleCommunications biology2025

Potassium binding by carbonyl clusters, halophilic adaptation and catalysis of Haloferax mediterranei D-2-hydroxyacid dehydrogenase.

Jessica Domenech, Nuttawan Pramanpol, Claudine Bisson, Sveta E Sedelnikova, Joshua R Barrett, Abdul A A B Dakhil, Vitaliy Mykhaylyk, Ali S Abdelhameed, Stephen E Harding, David W Rice and 2 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jessica DomenechDept. Bioquımica y Biología Molecular y EQA. Universidad de Alicante, Alicante, Spain.ORCID http://orcid.org/0000-0001-9171-3919
Nuttawan PramanpolSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Claudine BissonSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Sveta E SedelnikovaSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Joshua R BarrettSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Abdul A A B DakhilSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Vitaliy MykhaylykDiamond Light Source, Harwell Campus, Didcot, United Kingdom.
Ali S AbdelhameedNational Centre for Macromolecular Hydrodynamics, School of Biosciences, University of Nottingham, College Road, Sutton Bonington, Nottingham, UK.
Stephen E HardingNational Centre for Macromolecular Hydrodynamics, School of Biosciences, University of Nottingham, College Road, Sutton Bonington, Nottingham, UK.
David W RiceSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.ORCID http://orcid.org/0000-0002-7811-0539
Patrick J BakerSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom. p.baker@sheffield.ac.uk.ORCID http://orcid.org/0000-0003-1995-5643
Juan FerrerDept. Bioquımica y Biología Molecular y EQA. Universidad de Alicante, Alicante, Spain. JFerrer@ua.es.ORCID http://orcid.org/0000-0001-5856-8748

Funding

Generalitat Valenciana (Regional Government of Valencia) GV05/166Lister Institute of Preventive Medicine Summer StudentshipRCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/D524975/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/I003703/1RCUK | Science and Technology Facilities Council (STFC) MX1218RCUK | Science and Technology Facilities Council (STFC) MX24447RCUK | Science and Technology Facilities Council (STFC) MX300RCUK | Science and Technology Facilities Council (STFC) MX31850
6 · The paper itself

Abstract

Enzymes from salt-in halophiles are stable in conditions of low water activity with applications in chiral synthesis requiring organic solvents, yet the origins of such stability remains poorly understood. Here we describe the molecular basis of the reaction mechanism and dual NADH/NADPH-specificity of D2HDH, a 2-hydroxyacid dehydrogenase from the extreme halophile Haloferax mediterranei, an organism whose proteins have to remain active in high intracellular concentrations of KCl. Halophilic adaptations of D2HDH include the expected acidic surface and a reduction in hydrophobic surface resulting from a lower lysine content. Structure determination of crystals of D2HDH grown with KCl showed that bound K

Indexed as

Haloferax mediterraneiPotassiumAdaptation, PhysiologicalCatalysisPotassium

Identifiers

PMID40770045
PMCPMC12328707

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.