Evidence map›Paper›PMID 40769979›Full record

ArticleNature communications2025

Cryo-EM reveals molecular mechanisms underlying the inhibitory effect of netrin-4 on laminin matrix formation.

Arkadiusz W Kulczyk, Karen K McKee, Peter D Yurchenco

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Arkadiusz W KulczykInstitute for Quantitative Biomedicine, Department of Biochemistry and Microbiology, Rutgers University, Piscataway, NJ, USA. arek.kulczyk@rutgers.edu.ORCID http://orcid.org/0000-0001-5018-0992
Karen K McKeeDepartment of Pathology and Laboratory Medicine, Rutgers University-Robert Wood Johnson Medical School, Piscataway, NJ, USA.ORCID http://orcid.org/0000-0002-2657-5211
Peter D YurchencoDepartment of Pathology and Laboratory Medicine, Rutgers University-Robert Wood Johnson Medical School, Piscataway, NJ, USA.ORCID http://orcid.org/0000-0003-0387-2317

Funding

Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
BASEMENT MEMBRANE SELF-ASSEMBLY &STRUCTURER01DK036425 · NIDDK · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI YURCHENCO, PETER DANA · 1986 to 2022
$4.3M
NIDDK NIH HHS R01 DK036425NIGMS NIH HHS U24 GM129547
6 · The paper itself

Abstract

Netrin-4 is a tumor suppressor that interferes with formation of the laminin lattice. We employed cryo-electron microscopy to determine a structure of the protein complex consisting of the N-terminal fragments from netrin-4 and laminin γ1. The structure reveals that netrin-4 binds laminin γ1 at the molecular interface where laminin β1 would have bound, thus inhibiting the assembly of the heterotrimeric laminin polymer nodes consisting of α1, β1, and γ1 subunits, and their polymerization into the extracellular lattice. The four orders of magnitude higher affinity of the netrin-4-laminin γ1 interaction results from the larger buried surface area than the one formed by β1 and γ1 laminins and greater electrostatic surface complementarity. Our findings, supported by site-directed mutagenesis, solid-phase binding analysis, laminin polymerization, and Schwann cell assays, collectively demonstrate that, in addition to inhibiting laminin polymerization, netrin-4 disassembles the pre-existing laminin lattice. The structure has the potential to facilitate the development of novel therapies for cancer treatment.

Indexed as

Extracellular MatrixLamininNetrinsAnimalsCryoelectron MicroscopyHumansMiceModels, MolecularMutagenesis, Site-DirectedProtein BindingSchwann CellsLamininlaminin gamma 1NetrinsNTN4 protein, human

Identifiers

PMID40769979
PMCPMC12328585

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.