Evidence map›Paper›PMID 40769713›Full record

ReviewGenome research2025

The paradox of R-loops: guardians of the genome or drivers of disease?

Shachinthaka D Dissanayaka Mudiyanselage, Phillip Wulfridge, Kavitha Sarma

Abstract readReview
In one paragraph

Review in Genome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shachinthaka D Dissanayaka MudiyanselageThe Wistar Institute, Philadelphia, Pennsylvania 19104, USA.
Phillip WulfridgeThe Wistar Institute, Philadelphia, Pennsylvania 19104, USA.
Kavitha SarmaThe Wistar Institute, Philadelphia, Pennsylvania 19104, USA; kavitha@sarmalab.com.

Funding

CTCF-dependent mechanisms of ATRX in neuronal differentiationR01NS127828 · NINDS · WISTAR INSTITUTE · PI Kavitha Sarma · 2022 to 2026
$2.6M
ADNP mechanisms in R-loop regulation during differentiationR01GM143229 · NIGMS · WISTAR INSTITUTE · PI SARMA, KAVITHA · 2022 to 2025
$1.7M
R-loop functions in neuronal gene expression and genome organizationR01NS135217 · NINDS · WISTAR INSTITUTE · PI Kavitha Sarma · 2024 to 2026
$1.5M
NIGMS NIH HHS R01 GM143229NINDS NIH HHS R01 NS127828NINDS NIH HHS R01 NS135217
6 · The paper itself

Abstract

R-loops, chromatin structures containing DNA-RNA hybrids with displaced single-stranded DNA, play crucial roles in various cellular processes. Their formation is influenced by factors such as DNA topology, RNA stability, and the presence of GC-rich regions. However, excessive or uncontrolled R-loop accumulation can threaten genomic stability, leading to DNA damage, particularly double-strand breaks. To preserve genome integrity, cells have developed mechanisms to regulate R-loop formation and resolution. Dysregulation of these processes is linked to several diseases, including cancer and neurodegenerative disorders. In this review, we will explore the dynamics of R-loop formation and resolution and how they are detected, their roles in DNA damage and repair, and how their dysregulation may lead to immune responses and disease pathogenesis.

Indexed as

R-Loop StructuresAnimalsChromatinDNA DamageDNA RepairGenomeGenomic InstabilityHumansNeoplasmsNeurodegenerative DiseasesChromatin

Identifiers

PMID40769713
PMCPMC12400949

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.