Evidence map›Paper›PMID 40768335›Full record

ArticleCell reports2025

Allelic bias contributes to heterogeneous phenotypes of NK cell deficiency.

Seungmae Seo, Yong-Oon Ahn, Sagar L Patil, Jacqueline Armetta, Madrikha D Saturne, Everardo Hegewisch-Solloa, Nicole C Guilz, Achchhe Patel, Barbara Corneo, Malgorzata Borowiak and 1 more

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Seungmae SeoDivision of Allergy, Immunology, and Rheumatology, Department of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA.
Yong-Oon AhnDivision of Allergy, Immunology, and Rheumatology, Department of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA.
Sagar L PatilDivision of Allergy, Immunology, and Rheumatology, Department of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA.
Jacqueline ArmettaDivision of Allergy, Immunology, and Rheumatology, Department of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA; Department of Chemistry, Barnard College, New York, NY 10027, USA.
Madrikha D SaturneDivision of Allergy, Immunology, and Rheumatology, Department of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA.
Everardo Hegewisch-SolloaDivision of Allergy, Immunology, and Rheumatology, Department of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA.
Nicole C GuilzDivision of Allergy, Immunology, and Rheumatology, Department of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA.
Achchhe PatelColumbia Stem Cell Initiative Stem Cell Core, Columbia University Irving Medical Center, New York, NY 10032, USA.
Barbara CorneoColumbia Stem Cell Initiative Stem Cell Core, Columbia University Irving Medical Center, New York, NY 10032, USA.
Malgorzata BorowiakInstitute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Poznan, Poland.
Emily M MaceDivision of Allergy, Immunology, and Rheumatology, Department of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA. Electronic address: em3375@cumc.columbia.edu.

Funding

DETERMINING THE ROLE OF THE REPLICATIVE HELICASE IN HUMAN NK CELL DEVELOPMENTR01AI137275 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MACE, EMILY MARGARET · 2018 to 2022
$1.9M
Differential regulation of cell cycle entry and apoptosis in cytolytic lymphocytes informed by primary immunodeficiencyR01AI189818 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Emily Margaret Mace · 2025 to 2026
$1.5M
NIAID NIH HHS R01 AI137275NIAID NIH HHS R01 AI189818
6 · The paper itself

Abstract

While monogenic variants in CDC45-MCM-GINS (CMG) replisome proteins cause human natural killer cell deficiencies (NKDs), family members with the same inherited variants often have variable clinical and cellular phenotypes. We investigated two siblings with inherited compound heterozygous GINS4 variants but variable disease expressivity. Cell cycle impairment and increased apoptosis were detected following NK cell lineage commitment but not in pluripotent cells. While this effect was detected in both siblings, the efficiency of NK cell differentiation was variable and correlated with differential clinical severity of NKD. Further investigation of allelic expression of inherited GINS4 variants demonstrated expected biallelic expression of GINS4 in pluripotent cells and progenitors. However, allelic bias in lineage-committed NK cells led to over- or under-representation of more damaging GINS4 heterozygous variants associated with differential cellular and clinical severity. This study identifies allelic bias that causes phenotypic variation of a monogenic disease and defines additional mechanisms underlying immunodeficiency.

Indexed as

AllelesKiller Cells, NaturalCell DifferentiationFemaleHumansMalePedigreePhenotypeallelic biascell cycleCP: ImmunologyGINS4helicasehematopoiesisimmunodeficiencyinborn errors of immunityincomplete penetranceinduced pluripotent stem cellsnatural killer cells

Identifiers

PMID40768335
PMCPMC12450099

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.