Evidence map›Paper›PMID 40768221›Full record

ArticleJournal of chemical information and modeling2025

Decoding Protein Stabilization: Impact on Aggregation, Solubility, and Unfolding Mechanisms.

Martin Havlásek, Sérgio M Marques, Veronika Szotkowská, Antonín Kunka, Petra Babková, Jiří Damborský, Zbyněk Prokop, David Bednář

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Martin HavlásekLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.
Sérgio M MarquesLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.ORCID 0000-0002-6281-7505
Veronika SzotkowskáLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.
Antonín KunkaLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.
Petra BabkováLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.
Jiří DamborskýLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.ORCID 0000-0002-7848-8216
Zbyněk ProkopLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.ORCID 0000-0001-9358-4081
David BednářLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.ORCID 0000-0002-6803-0340

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modern computational tools can predict the mutational effects on protein stability, sometimes at the expense of activity or solubility. Here, we investigate two homologous computationally stabilized haloalkane dehalogenases: (i) the soluble thermostable DhaA115 (

Indexed as

HydrolasesProtein AggregatesProtein UnfoldingHydrophobic and Hydrophilic InteractionsMolecular Dynamics SimulationProtein StabilitySolubilityhaloalkane dehalogenaseHydrolasesProtein Aggregates

Identifiers

PMID40768221
PMCPMC12381856

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.