Evidence map›Paper›PMID 40767478›Full record

ArticleMicrobiology resource announcements2025

The FUNG-GROWTH database: linking fungal phenotype to genome.

Ronald P de Vries, Ad Wiebenga, Guillermo Aguilar Osorio, Maria Victoria Aguilar Pontes, Evy Battaglia, Tiziano Benocci, Isabelle Benoit Gelber, Ourdia Bouzid, Sara Casado Lopez, Nancy Coconi Linares and 28 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. The gold-standard genome ofStudies in mycology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Ronald P de VriesFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.ORCID 0000-0002-4363-1123
Ad WiebengaFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Guillermo Aguilar OsorioFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Maria Victoria Aguilar PontesFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Evy BattagliaFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Tiziano BenocciFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Isabelle Benoit GelberFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Ourdia BouzidFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Sara Casado LopezFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Nancy Coconi LinaresFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Alfons J M DebetsLaboratory of Genetics, Wageningen University, Wageningen, the Netherlands.
Jan F J de JongMicrobiology, Utrecht University, Utrecht, the Netherlands.
Elodie DrulaArchitecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Aix-Marseille Université, INRAE, UMR 1163, Biodiversité et Biotechnologie Fongiques, Marseille, France.
Daniel FalkoskiFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Jan GrijpstraMicrobiology, Utrecht University, Utrecht, the Netherlands.
Birgit S GrubenFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Sylvia KlaubaufFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Claire KhosraviFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Joanna E KowalczykFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Roland S KunFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
April J LiwanagFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Ronnie J M LubbersFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Eline MajoorFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Sakinie MisiedjanFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Astrid MüllerFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Şebnem Ozturkoglu BudakFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Aleksandrina PatyshakuliyevaFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Diogo RoblFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Blanca Trejo-AguilarFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Joost van den BrinkFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Yoni VisserFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Alexandra Vivas-DuarteFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Aniek VugtsFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Miaomiao ZhouFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Mao PengFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Pedro M CoutinhoArchitecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Aix-Marseille Université, INRAE, UMR 1163, Biodiversité et Biotechnologie Fongiques, Marseille, France.
Bernard HenrissatDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. Lyngby, Denmark.
Vincent RobertBioinformatics, Software Development and Databasing, Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The utilization of plant biomass, polysaccharides, and associated monosaccharides is a crucial part of fungal physiology. With an increasing number of genomes, annotation can address differences in this process but often lacks detailed biological support. FUNG-GROWTH (https://www.fung-growth.org/) aims to provide and host this to improve genome analysis.

Indexed as

fungigrowth profilesmonosaccharidesplant biomasspolysaccharides

Identifiers

PMID40767478
PMCPMC12424322

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.