Evidence map›Paper›PMID 40767435›Full record

ArticleAnalytical chemistry2025

Quantitative HILIC-Q-TOF-MS Analysis of Glycosaminoglycans and Non-reducing End Carbohydrate Biomarkers via Glycan Reductive Isotopic Labeling.

Amrita Basu, Stephanie Archer-Hartmann, Pradeep Chopra, Mehrnoush Taherzadeh Ghahfarrokhi, Xiaolin Dong, Neil G Patel, Yiwen Zhang, Biswa Choudhury, Kosuke Funato, Dhananjay Yellajoshyula and 3 more

Abstract read
In one paragraph

Article in Analytical chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Glycosaminoglycans and Their Role in Capillary Walls.Advances in experimental medicine and biology · 2026
    Review
  8. Mucin-typebioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Amrita BasuComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.
Stephanie Archer-HartmannComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0001-8752-7363
Pradeep ChopraComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0002-6003-4574
Mehrnoush Taherzadeh GhahfarrokhiComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.
Xiaolin DongComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.
Neil G PatelComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.
Yiwen ZhangDepartment of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106, United States.
Biswa ChoudhuryGlycoAnalytics Core, University of California San Diego, La Jolla, California 92093, United States.
Kosuke FunatoDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, United States.
Dhananjay YellajoshyulaDepartment of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106, United States.
Geert-Jan BoonsComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0003-3111-5954
Parastoo AzadiComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0002-6166-9432
Ryan J WeissComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0002-4563-6075

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
National Glycoscience Resource- CCRC Service and Training - NGlycoR@CCRCR24GM137782 · NIGMS · UNIVERSITY OF GEORGIA · PI Parastoo Azadi · 2020 to 2026
$5.2M
Precision Medicine for the Peripheral Nervous System Disorder Familiar DysautonomiaR01NS114567 · NINDS · UNIVERSITY OF GEORGIA · PI Nadja Zeltner · 2021 to 2026
$3.0M
Role of DYT6 Dystonia Protein THAP1 in Oligodendroglial Mediated ECM Homeostasis During CNS DevelopmentR01NS122990 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI WILLIAM T. DAUER, Dhananjay Yellajoshyula · 2022 to 2026
$2.3M
3-O-sulfation of heparan sulfate as a regular of protein functionR01HL151617 · NHLBI · UNIVERSITY OF GEORGIA · PI BOONS, GEERT-JAN, MOREMEN, KELLEY W. · 2020 to 2023
$1.8M
Investigating the molecular mechanisms of glycosaminoglycan assemblyR35GM150736 · NIGMS · UNIVERSITY OF GEORGIA · PI Ryan Joseph Weiss · 2023 to 2026
$1.5M
T32 Predoctoral training grant in GlycosciencesT32GM145467 · NIGMS · UNIVERSITY OF GEORGIA · PI I JONATHAN AMSTER, Robert S. Haltiwanger · 2022 to 2026
$1.2M
Microglial-Mediated Glycosaminoglycan Catabolism in MPS VII Neuropathology.R21NS144683 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI YELLAJOSHYULA, DHANANJAY · 2025 to 2025
$453k
Characterizing and treating peripheral nervous system dysfunction in Sanfilippo SyndromeR21NS135412 · NINDS · UNIVERSITY OF GEORGIA · PI Ryan Joseph Weiss, Nadja Zeltner · 2025 to 2026
$415k
Genome-wide Analysis of Anticoagulant Heparin Sulfate for Bioengineering HeparanR21HL167091 · NHLBI · UNIVERSITY OF GEORGIA · PI WEISS, RYAN JOSEPH · 2023 to 2024
$415k
NHLBI NIH HHS R01 HL151617NHLBI NIH HHS R21 HL167091NIGMS NIH HHS P41 GM103390NIGMS NIH HHS R24 GM137782NIGMS NIH HHS R35 GM150736NIGMS NIH HHS T32 GM145467NINDS NIH HHS R01 NS114567NINDS NIH HHS R01 NS122990NINDS NIH HHS R21 NS135412NINDS NIH HHS R21 NS144683
6 · The paper itself

Abstract

Glycosaminoglycans (GAGs) are linear, heterogeneous polysaccharides expressed on all animal cells. Sulfated GAGs, including heparan sulfate (HS) and chondroitin/dermatan sulfate (CS/DS), are involved in numerous physiological and pathological processes; therefore, precise and robust analytical methods for their characterization are essential to correlate structure with function. In this study, we developed a method utilizing hydrophilic interaction liquid chromatography coupled with time-of-flight mass spectrometry (HILIC-Q-TOF-MS) and glycan reductive isotopic reducing end labeling (GRIL) for the quantitative compositional analysis of HS and CS/DS polysaccharides. Lyase-generated disaccharides and commercial standards were chemically tagged on the reducing end with aniline stable isotopes, thus enabling the absolute quantification of HS and CS/DS disaccharides in complex biological samples. In addition, we adapted this workflow, in conjunction with new synthetic carbohydrate standards, for the quantification of disease-specific non-reducing end (NRE) carbohydrate biomarkers that accumulate in patients with mucopolysaccharidoses (MPS), a subclass of lysosomal storage disorders. As a proof of concept, we applied this method to measure NRE biomarkers in patient-derived MPS IIIA and MPS IIID fibroblasts, as well as in cortex tissue from a murine model of MPS VII. Overall, this method demonstrates improved sensitivity compared to previous GRIL-LC/MS techniques and, importantly, avoids the use of ion-pairing reagents, which are undesirable in certain mass spectrometry instrumentation and contexts. By combining the benefits of HILIC separation with isotopic labeling, our approach offers a robust and accessible tool for the analysis of GAGs, paving the way for advancements in understanding GAG structure and function.

Indexed as

GlycosaminoglycansPolysaccharidesAnimalsBiomarkersChromatography, LiquidHeparan SulfateHumansHydrophobic and Hydrophilic InteractionsIsotope LabelingMass SpectrometryMiceBiomarkersGlycosaminoglycansHeparan SulfatePolysaccharides

Identifiers

PMID40767435
PMCPMC12368834

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.