Evidence map›Paper›PMID 40765494›Full record

ArticleThe plant genome2025

Genome-wide identification and evolutionary analysis of disease resistance genes in Brassica carinata.

Junrey C Amas, Philipp E Bayer, Wei Hong Tan, Aldrin Cantila, Aria Dolatabadian, William J W Thomas, David Edwards, Jacqueline Batley

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Junrey C AmasSchool of Biological Sciences and the Institute of Agriculture, The University of Western Australia, Crawley, Western Australia, Australia.ORCID https://orcid.org/0000-0002-2179-5557
Philipp E BayerSchool of Biological Sciences and the Institute of Agriculture, The University of Western Australia, Crawley, Western Australia, Australia.ORCID https://orcid.org/0000-0001-8530-3067
Wei Hong TanSchool of Biological Sciences and the Institute of Agriculture, The University of Western Australia, Crawley, Western Australia, Australia.
Aldrin CantilaThe Institute of Agriculture, The University of Western Australia, Crawley, Western Australia, Australia.
Aria DolatabadianSchool of Biological Sciences and the Institute of Agriculture, The University of Western Australia, Crawley, Western Australia, Australia.
William J W ThomasSchool of Biological Sciences and the Institute of Agriculture, The University of Western Australia, Crawley, Western Australia, Australia.ORCID https://orcid.org/0000-0002-5147-8704
David EdwardsSchool of Biological Sciences and the Centre for Applied Bioinformatics, The University of Western Australia, Crawley, Western Australia, Australia.ORCID https://orcid.org/0000-0001-7599-6760
Jacqueline BatleySchool of Biological Sciences and the Institute of Agriculture, The University of Western Australia, Crawley, Western Australia, Australia.ORCID https://orcid.org/0000-0002-5391-5824

Funding

Australian Research Council DP200100762Australian Research Council DP210100296Australian Research Council FL230100030Grains Research and Development Corporation UWA1905-006RTX
6 · The paper itself

Abstract

Brassica carinata is considered an orphan crop, yet it is vital for understanding the evolution of the triangle of U Brassica species. The availability of a genome reference for this species has allowed for the interrogation of the genomic and genetic underpinnings of important traits, including disease resistance. In this study, we report a comprehensive analysis of resistance gene analogs (RGAs) in the first genome assembly for B. carinata (zd-1). A total of 2570 RGAs were predicted, of which 2020 were transmembrane leucine-rich repeats and 550 were nucleotide-binding site leucine-rich repeats. Gene duplication events affected 65.2% of the RGAs, which were classified as either intergenomic or intragenomic duplications. The contrasting patterns of these gene duplication events between the two subgenomes (B and C) support previous findings indicating the presence of subgenome dominance in this species, a characteristic that is shared with the other allopolyploid Brassicas. Comparative analysis with its diploid progenitors, B. nigra and B.oleracea, revealed conservation of genomic features among these species, while phylogenetic analysis suggests that B. carinata RGAs have undergone extensive expansion. This study is the first to analyze the complete set of RGAs within the B. carinata genome, presenting a comprehensive view of the disease resistance landscape in this species.

Indexed as

BrassicaDisease ResistanceEvolution, MolecularGenes, PlantGenome, PlantPlant DiseasesGene DuplicationPhylogeny

Identifiers

PMID40765494
PMCPMC12326289

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.