Evidence map›Paper›PMID 40764831›Full record

ReviewMolecular systems biology2025

Longitudinal big biological data in the AI era.

Adil Mardinoglu, Hasan Turkez, Minho Shong, Vishnuvardhan Pogunulu Srinivasulu, Jens Nielsen, Bernhard O Palsson, Leroy Hood, Mathias Uhlen

Abstract readReview
In one paragraph

Review in Molecular systems biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Machine Learning Predicts Treatment Response and Prognostic Pathways From Whole-Blood Transcriptome in Primary Biliary Cholangitis.Liver international : official journal of the International Association for the Study of the Liver · 2026
    Article
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  4. Review
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Adil MardinogluScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden. adilm@scilifelab.se.ORCID http://orcid.org/0000-0002-4254-6090
Hasan TurkezDepartment of Medical Biology, Faculty of Medicine, Atatürk University, Erzurum, 25240, Turkey.
Minho ShongGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea.ORCID http://orcid.org/0000-0002-0247-7115
Vishnuvardhan Pogunulu SrinivasuluVizzhy Longevity Inc., Middletown, DE, 19709, USA.ORCID http://orcid.org/0009-0002-9859-3838
Jens NielsenBioInnovation Institute, Copenhagen, DK-2200, Denmark.ORCID http://orcid.org/0000-0002-9955-6003
Bernhard O PalssonDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-2357-6785
Leroy HoodPhenome Health, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-7158-3678
Mathias UhlenScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-4858-8056

Funding

Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) 72254National Research Foundation of Korea (NRF) NRF-2023-R1A2C3003438
6 · The paper itself

Abstract

Generating longitudinal and multi-layered big biological data is crucial for effectively implementing artificial intelligence (AI) and systems biology approaches in characterising whole-body biological functions in health and complex disease states. Big biological data consists of multi-omics, clinical, wearable device, and imaging data, and information on diet, drugs, toxins, and other environmental factors. Given the significant advancements in omics technologies, human metabologenomics, and computational capabilities, several multi-omics studies are underway. Here, we first review the recent application of AI and systems biology in integrating and interpreting multi-omics data, highlighting their contributions to the creation of digital twins and the discovery of novel biomarkers and drug targets. Next, we review the multi-omics datasets generated worldwide to reveal interactions across multiple biological layers of information over time, which enhance precision health and medicine. Finally, we address the need to incorporate big biological data into clinical practice, supporting the development of a clinical decision support system essential for AI-driven hospitals and creating the foundation for an AI and systems biology-based healthcare model.

Indexed as

Artificial IntelligenceBig DataSystems BiologyComputational BiologyGenomicsHumansPrecision MedicineArtificial IntelligenceDigital TwinsLongitudinal Multi-omics DataPrecision MedicineSystems Biology

Identifiers

PMID40764831
PMCPMC12405541

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.