Evidence map›Paper›PMID 40763798›Full record

ArticleJournal of the Royal Society, Interface2025

Larval zebrafish swim bouts in three dimensions reveal both new and redundant behaviours.

Aniket Ravan, Yann R Chemla, Martin Gruebele

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Disruption ofiScience · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Aniket RavanCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign Center for Biophysics and Computational Biology, Urbana, IL, USA.
Yann R ChemlaCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign Center for Biophysics and Computational Biology, Urbana, IL, USA.
Martin GruebeleCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign Center for Biophysics and Computational Biology, Urbana, IL, USA.ORCID 0000-0001-9291-8123

Funding

NSF PHY
6 · The paper itself

Abstract

Two-dimensional swimming of larval zebrafish has been studied extensively. We use a three-dimensional imaging system and neural network for pose estimation to study their three-dimensional behaviour. We answer two questions: (i) are spontaneous or delayed-onset turns from free swim, dark flash and acoustic startle experiments objectively differentiable? and (ii) could larvae use stochastic selection among responses, 'feinting' during an escape? Our analysis identifies two new major modes of dorso-ventral displacement. The first half-cycle of swim bouts contains most of the information to distinguish behaviours. Dimensionality reduction as previously applied to nematodes and fruit flies reveals four clusters of swimming behaviour: the previously classified short-latency C-turns (SLCs), O-turns, free swims and a behaviour we term 'voluntary turn', which comprises turns during free swimming and time-delayed turns during dark flash and acoustic startle experiments that cannot be distinguished even when additional half-cycles are included in the analysis. Unlike previous clustering analyses, we provide a physical picture of behavioural clusters in terms of two coordinates. The larvae also engage in a new behaviour: the vertical component of the SLC enables the animal to either extend the initial direction or switch it in the middle. We rationalize this behaviour as a feinting response for predator evasion.

Indexed as

Behavior, AnimalSwimmingZebrafishAnimalsLarvaReflex, Startleautomated behavioural analysisgame theorymachine learning

Identifiers

PMID40763798
PMCPMC12324872

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.