Evidence map›Paper›PMID 40763731›Full record

ArticleCell host & microbe2025

Amino acid competition shapes Acinetobacter baumannii gut carriage.

Xiaomei Ren, R Mason Clark, Dziedzom A Bansah, Elizabeth N Varner, Connor R Tiffany, Kanchan Jaswal, John H Geary, Olivia A Todd, Jonathan D Winkelman, Elliot S Friedman and 7 more

Abstract read
In one paragraph

Article in Cell host & microbe, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. ISmLife · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Catabolism of serine enantiomers represses enterohemorrhagicProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. A regulator of amino acid catabolism controlsbioRxiv : the preprint server for biology · 2025
    Article
  10. Arginine utilization inInfection and immunity · 2025
    Article
  11. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Xiaomei RenDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.
R Mason ClarkDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.
Dziedzom A BansahDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.
Elizabeth N VarnerDepartment of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15227, USA.
Connor R TiffanyDivision of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Kanchan JaswalDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.
John H GearyDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.
Olivia A ToddDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.
Jonathan D WinkelmanTrestle LLC, Milwaukee, WI 53211, USA.
Elliot S FriedmanDivision of Gastroenterology and Hepatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Riley N JarrettDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.
Babette S ZemelDepartment of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Gary D WuDivision of Gastroenterology and Hepatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Joseph P ZackularDivision of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Microbial Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
William H DePasDepartment of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15227, USA.
Judith BehnsenDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.
Lauren D PalmerDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA. Electronic address: ldpalmer@uic.edu.

Funding

Phenotypic Diversity in COVID-19UL1TR001878 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2016 to 2025
$102.4M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI REBECCA G WELLS · 1997 to 2026
$32.5M
Infant Growth and Microbiome Study 2R01DK107565 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI WU, GARY D., ZEMEL, BABETTE S · 2015 to 2019
$3.6M
Pediatric Ambulatory Blood Pressure Trajectory and Brain Health in MidlifeR01HL143440 · NHLBI · AUGUSTA UNIVERSITY · PI MCDOWELL, JENNIFER E, SU, SHAOYONG · 2019 to 2022
$2.8M
Molecular interactions in the gut microbiota during early life colonization and perturbationR35GM138369 · NIGMS · CHILDREN'S HOSP OF PHILADELPHIA · PI Joseph Paul Zackular · 2020 to 2026
$2.7M
Probing the role of commensal intestinal fungi during Salmonella pathogenesisR01AI143641 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI BEHNSEN, JUDITH · 2019 to 2023
$2.0M
The Impact of the Cystic Fibrosis infection environment on biofilm development of nontuberculous mycobacteriaR01AI170607 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI William H. DePas · 2023 to 2026
$1.6M
Inter-kingdom interactions of Salmonella Typhimurium and Candida albicans in the gutR01AI175223 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Judith Behnsen · 2024 to 2026
$1.6M
Microbiota-mediated colonization resistance to Acinetobacter baumannii.R01AI189516 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Lauren Disterhoft Palmer · 2025 to 2026
$1.2M
The impact of dietary zinc deficiency on innate immunity to lung infectionR00HL143441 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI PALMER, LAUREN DISTERHOFT · 2021 to 2023
$954k
NCATS NIH HHS UL1 TR001878NHLBI NIH HHS R00 HL143441NHLBI NIH HHS R01 HL143440NIAID NIH HHS R01 AI143641NIAID NIH HHS R01 AI170607NIAID NIH HHS R01 AI175223NIAID NIH HHS R01 AI189516NIDDK NIH HHS P30 DK050306NIDDK NIH HHS R01 DK107565NIGMS NIH HHS R35 GM138369
6 · The paper itself

Abstract

Asymptomatic colonization is often critical for persistence of antimicrobial-resistant pathogens, such as Acinetobacter baumannii, and can increase the risk of clinical infections. However, the ecological factors shaping A. baumannii gut colonization remain unclear. We show that A. baumannii and other pathogenic Acinetobacter evolved to utilize the amino acid ornithine, a non-preferred carbon source, to compete with resident microbiota and persist in the gut in mice. A. baumannii encodes ornithine succinyltransferase (AstO) necessary for catabolizing ornithine, especially in conditions of increased microbial diversity. Supplemental dietary ornithine promotes long-term fecal shedding of A. baumannii. By contrast, supplementation of preferred carbon sources-monosodium glutamate or histidine-abolishes the requirement for ornithine catabolism. Additionally, A. baumannii gut carriage is higher in formula-fed human infants, who generally consume higher levels of protein, revealing dietary impacts on Acinetobacter colonization. Together, these results reveal that ornithine catabolism facilitates A. baumannii colonization, providing a reservoir for pathogen spread.

Indexed as

Acinetobacter baumanniiAcinetobacter InfectionsAmino AcidsGastrointestinal MicrobiomeOrnithineAnimalsBacterial ProteinsFecesFemaleHumansInfantMiceMice, Inbred C57BLAmino AcidsBacterial ProteinsOrnithineAcinetobacter baumanniiantimicrobial resistancecarbon preferencedietary supplementsgut colonizationmicrobiomemicrobiotaornithine

Identifiers

PMID40763731
PMCPMC12375414

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.