Evidence map›Paper›PMID 40759888›Full record

ArticleNature communications2025

Virus-human chromatin interactions reorganise 3D genome and hijack KDM5B for promoting metastasis in nasopharyngeal carcinoma.

Dittman Lai-Shun Chung, Zhaozheng Hou, Ying Wang, Kazi Anisha Islam, Songran Liu, Jiayan Liu, Larry Ka-Yue Chow, Yuki Yuk-Wun Wong, Cyrus Paak-Ting Chak, Yingpei Zhang and 17 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Dittman Lai-Shun Chung *Department of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Zhaozheng Hou *Department of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Ying Wang *State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, The Sun Yat-sen University Cancer Center, Guangzhou, PR China.
Kazi Anisha Islam *Department of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Songran Liu *Department of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Jiayan LiuCentre for Virology, Vaccinology and Therapeutics, Hong Kong Science and Technology Park, Hong Kong, Hong Kong (SAR), PR China.
Larry Ka-Yue ChowDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Yuki Yuk-Wun WongDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Cyrus Paak-Ting ChakDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0009-0004-9162-9791
Yingpei ZhangDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Lanqi GongDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0000-0002-1531-4948
Ziyang QiDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Kiu-Wai ChengDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0000-0002-8154-7395
Zhuoyou YuDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Ping FengDepartment of Radiation Oncology, Sun Yat-sen University Cancer Centre, Guangzhou, PR China.ORCID http://orcid.org/0000-0002-2736-8345
Zilu HuangDepartment of Radiation Oncology, Sun Yat-sen University Cancer Centre, Guangzhou, PR China.
Roger Kai-Cheong NganDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0000-0003-0755-3604
Xinyuan GuanDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0000-0002-4485-6017
Wai-Tong NgDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Zhonghua LiuDepartment of Biostatistics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-3048-9823
Anna Chi-Man TsangDepartment of Anatomical and Cellular Pathology and State Key Laboratory of Translational Oncology, The Chinese University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0000-0001-6817-4590
Dora Lai-Wan KwongDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.
Anne Wing-Mui LeeDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0000-0003-2972-0231
Victor Ho-Fun LeeDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0000-0002-6283-978X
Honglin ChenCentre for Virology, Vaccinology and Therapeutics, Hong Kong Science and Technology Park, Hong Kong, Hong Kong (SAR), PR China.ORCID http://orcid.org/0000-0001-5108-8338
Yunfei XiaState Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, The Sun Yat-sen University Cancer Center, Guangzhou, PR China.
Wei DaiDepartment of Clinical Oncology, Centre of Cancer Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong (SAR), PR China. weidai2@hku.hk.ORCID http://orcid.org/0000-0002-5558-0685

Funding

Food and Health Bureau (Food and Health Bureau of the Government of the Hong Kong Special Administrative Region) 08192296Guangdong Science and Technology Department (Science and Technology Department, Guangdong Province) 2021A0505110010Innovation and Technology Commission (ITF) Health@InnoHKResearch Grants Council, University Grants Committee (RGC, UGC) 17102619Research Grants Council, University Grants Committee (RGC, UGC) T12-703/22-R; T123-70323-NShenzhen Science and Technology Innovation Commission JCYJ20220818103014030 and ZDSYS20210623091811035
6 · The paper itself

Abstract

Epstein-Barr virus, the first identified human DNA tumour virus, is detectable in more than 90% of nasopharyngeal carcinoma patients in endemic regions. The 3D chromosome conformation analysis reveals that virus‒host chromatin interactions induce the spatial reorganisation of loops and compartments, resulting in "enhancer infestation" and switch of "H3K27 bivalency" at EBV-interacting regions. Through this mechanism, EBV hijacks KDM5B, a gatekeeper of genome stability, and its binding targets, leading to aberrant activation of an EBVIR-enhancer-KDM5B signature. Cancer cells with this signature present increased MYC activation, DNA damage responses, and epigenetic plasticity of epithelial-immune dual features with metastatic potential. Our multicentre multiomics study confirms that this signature is the prerequisite for chromosome instability and can be utilised as a risk factor for distant metastasis. This study highlights a mechanism in which latent viral episomes can alter the host high-order epigenotype, promoting transcriptional rewiring and metastasis in NPC.

Indexed as

ChromatinEpstein-Barr Virus InfectionsHerpesvirus 4, HumanJumonji Domain-Containing Histone DemethylasesNasopharyngeal CarcinomaNasopharyngeal NeoplasmsRepressor ProteinsCell Line, TumorEpigenesis, GeneticGene Expression Regulation, NeoplasticGenome, HumanHost-Pathogen InteractionsHumansNeoplasm MetastasisNuclear ProteinsChromatinJumonji Domain-Containing Histone DemethylasesKDM5B protein, humanNuclear ProteinsRepressor Proteins

Identifiers

PMID40759888
PMCPMC12322282

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.