Evidence map›Paper›PMID 40759841›Full record

ArticleDiscover oncology2025

Gene expression cluster differences and molecular correlation with the STING pathway in orbital MALT lymphoma and orbital IgG4-related eye disease.

Mizuki Tagami, Keishiro Isayama, Mizuho Nishio, Atsuko Yoshikawa, Norihiko Misawa, Atsushi Sakai, Yusuke Haruna, Mami Tomita, Yoichi Mizukami, Atsushi Azumi and 1 more

Abstract read
In one paragraph

Article in Discover oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Mizuki TagamiDepartment of Ophthalmology and Visual Sciences, Graduate School of Medicine, Osaka Metropolitan University, 1-5-7 Asahimachi, Abeno-ku, Osaka-shi, 545-8586, Osaka, Japan. mizuki1979feb@yahoo.co.jp.ORCID http://orcid.org/0000-0002-8771-7252
Keishiro IsayamaInstitute of Gene Research, Yamaguchi University Science Research Center, Yamaguchi, Japan.
Mizuho NishioCenter for Advanced Medical Engineering Research & Development, Kobe University Graduate School of Medicine, Kobe, Hyogo, Japan.
Atsuko YoshikawaOphthalmology Department and Eye Center, Kobe Kaisei Hospital, Kobe, Hyogo, Japan.
Norihiko MisawaDepartment of Ophthalmology and Visual Sciences, Graduate School of Medicine, Osaka Metropolitan University, 1-5-7 Asahimachi, Abeno-ku, Osaka-shi, 545-8586, Osaka, Japan.
Atsushi SakaiDepartment of Ophthalmology and Visual Sciences, Graduate School of Medicine, Osaka Metropolitan University, 1-5-7 Asahimachi, Abeno-ku, Osaka-shi, 545-8586, Osaka, Japan.
Yusuke HarunaDepartment of Ophthalmology and Visual Sciences, Graduate School of Medicine, Osaka Metropolitan University, 1-5-7 Asahimachi, Abeno-ku, Osaka-shi, 545-8586, Osaka, Japan.
Mami TomitaDepartment of Ophthalmology and Visual Sciences, Graduate School of Medicine, Osaka Metropolitan University, 1-5-7 Asahimachi, Abeno-ku, Osaka-shi, 545-8586, Osaka, Japan.
Yoichi MizukamiInstitute of Gene Research, Yamaguchi University Science Research Center, Yamaguchi, Japan.
Atsushi AzumiOphthalmology Department and Eye Center, Kobe Kaisei Hospital, Kobe, Hyogo, Japan.
Shigeru HondaDepartment of Ophthalmology and Visual Sciences, Graduate School of Medicine, Osaka Metropolitan University, 1-5-7 Asahimachi, Abeno-ku, Osaka-shi, 545-8586, Osaka, Japan.

Funding

Charitable Trust Fund for Ophthalmic Research in Commemoration of Santen Pharmaceutical's Founder 2022Japan Society for the Promotion of Science 22K07665Japan Society for the Promotion of Science 23K09013Osaka community Foundation 2023
6 · The paper itself

Abstract

purposeMucosa-associated lymphoid tissue (MALT) lymphoma in the orbital region and IgG4-related ophthalmic disease (IgG4-ROD) account for the majority of mass lesions in the orbital region. These diseases may show similar shadows on radiologic images, and many cases are difficult to differentiate clinically. Using histology, we investigated the gene expression clusters (RNA-seq) and molecular differences responsible for these two diseases.

designRetrospective cohort study. SUBJECTS: Patients diagnosed with orbital MALT and IgG4-ROD who underwent surgical treatment at Osaka Metropolitan University or Kobe Kaisei Hospital, Japan, were included in the study.

methodsFresh tissues extracted from 20 cases of MALT lymphoma and IgG4-ROD histopathologically diagnosed were subjected to next-generation sequencing analysis, and a sequence library was generated. Next-generation sequencing analysis was performed to compare gene expression between the two groups, and principal component and cluster hierarchy analyses were performed. Genes exhibiting significant changes in expression were examined individually after pathway analysis; immunohistochemical staining was performed to determine the intensity and staining morphology of components of significantly altered pathways.

main outcome measuresGene cluster differences between orbital MALT lymphoma and IgG4-ROD.

resultsIn principal component analysis, orbital MALT lymphoma and IgG4-ROD clustered in component 2. Clear cluster differences were observed, except for one case that appeared to be IgG4-producing MALT lymphoma. This apparent case of IgG4-producing MALT lymphoma clustered just between the IgG4-ROD and MALT lymphoma clusters. Analysis of upregulated genes between IgG4-ROD and MALT lymphoma identified 582 candidate genes (P < 0.01). Pathway analysis of MALT lymphoma suggested that the STING pathway was activated. Downstream pathway analysis identified eight significant gene expression changes (P < 0.05). STING immunohistochemical analysis indicated a quantitative difference in staining pattern between IgG4-ROD and MALT lymphoma (P < 0.01). STING-positive staining within cells was significantly greater in MALT than the Golgi complex near the nucleus.

conclusionsOrbital MALT lymphoma and IgG4-ROD can be differentiated by two gene expression clusters. The STING pathway may play a more important role in orbital MALT lymphoma than orbital IgG4-ROD.

Indexed as

IgG4-related ophthalmic disease (IgG4-ROD)ImmunohistochemistryMachine learningOrbital MALT lymphomaPrincipal component analysisRNA-seqSTING

Identifiers

PMID40759841
PMCPMC12321727

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.