Evidence map›Paper›PMID 40759618›Full record

ArticlePlant physiology2025

Cytosolic- and membrane-localized oxidized indole-3-acetic acid formation regulates developmental auxin transients.

Mark Jenness, Reuben Tayengwa, Lillyanna House, Shiyun Cao, Román Ramos Báez, Seema Nath, Candace A Pritchard, Anket Sharma, Julia Mergner, Frédèric Rivière and 8 more

Abstract read
In one paragraph

Article in Plant physiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Mark JennessDepartment of Pant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA.ORCID 0000-0002-5045-5519
Reuben TayengwaDepartment of Pant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA.ORCID 0000-0003-0563-470X
Lillyanna HouseDepartment of Pant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA.ORCID 0009-0009-1243-5697
Shiyun CaoHoward Hughes Medical Institute, Department of Pharmacology, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0003-1201-4963
Román Ramos BáezDepartment of Biology, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-0934-5342
Seema NathDepartment of Horticulture and Crop Science, Laboratory for the Analysis of Metabolites from Plants Metabolomics Facility, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0002-8362-1165
Candace A PritchardDepartment of Pant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA.ORCID 0000-0002-7520-2884
Anket SharmaDepartment of Pant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA.ORCID 0000-0002-5251-9045
Julia MergnerProteomics and Bioanalytics, Technical University of Munich (TUM), Freising 85354, Germany.ORCID 0000-0002-4332-1280
Frédèric RivièreUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC)  Gif-sur-Yvette 91198, France.ORCID 0000-0001-6366-1904
Thierry MeinnelUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC)  Gif-sur-Yvette 91198, France.ORCID 0000-0001-5642-8637
Carmela GiglioneUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC)  Gif-sur-Yvette 91198, France.ORCID 0000-0002-7475-1558
Bernhard KusterProteomics and Bioanalytics, Technical University of Munich (TUM), Freising 85354, Germany.ORCID 0000-0002-9094-1677
Joshua J BlakesleeDepartment of Horticulture and Crop Science, Laboratory for the Analysis of Metabolites from Plants Metabolomics Facility, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0003-2673-1998
Jennifer L NemhauserDepartment of Biology, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-8909-735X
Ning ZhengHoward Hughes Medical Institute, Department of Pharmacology, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-1039-1581
Angus S MurphyDepartment of Pant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA.ORCID 0000-0001-5649-7413
Wendy Ann PeerDepartment of Pant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA.ORCID 0000-0003-0046-7324

Funding

Control of protein degradation dynamics in the auxin responseR01GM107084 · NIGMS · UNIVERSITY OF WASHINGTON · PI NEMHAUSER, JENNIFER L · 2014 to 2022
$2.4M
CanMoreCNRSEuropean Cooperation in Science and Technology CA20113France-Germany PRCI ANR-20 CE92-0040French National Research AgencyFrench StateGilliam Fellow of the Howard Hughes Medical Institute ERA-NET, ANR-17-CAPS-0001-01Hatch Capacity 1002600Hatch Capacity MD-ENST-7377Howard Hughes Medical InstituteIBiSAIle de France RegionMaryland Agricultural Experiment StationMaryland Agricultural Experiment Station OHO01426NIGMS NIH HHS R01 GM107084NIH HHS R01- GM107084Paris-Saclay UniversityPlan CancerProteoCure COSTSaclay Plant Sciences ANR-11-IDEX-0003Saclay Plant Sciences ANR-17-EUR-0007Saclay Plant Sciences EUR SPS-GSRUSDA National Institute of Food and AgricultureUS Department of Energy, Basic Energy Sciences DE-FG02-06ER15804
6 · The paper itself

Abstract

Catabolism of the auxin indole-3-acetic acid (IAA) to terminate cellular responses primarily occurs in three steps: (i) conjugation of IAA to Asp/Glu, (ii) oxidation of the indole ring by DIOXYGENASE FOR AUXIN OXIDATION (DAO), and (iii) amidohydrolase cleavage of Asp/Glu. This study examines if IAA oxidation historically associated with membranes is mediated by DAO isoforms and if the oxidized auxin product (oxIAA) retains nominal functionality. We show that Arabidopsis thaliana DAO1 exhibits both soluble and auxin-dependent plasma membrane association, and that oxIAA exhibits weak "anti-auxin" activity. Both soluble and membrane-associated DAO1 primarily oxidized IAAsp. DAO2 activity was enzymatically similar to DAO1 and occurred where IAA levels were high. DAO1 and DAO2 functioned synergistically in adventitious root formation and in temperature-dependent petal development. In vitro assays showed that oxIAA acts as a molecular glue between repressor auxin/indole-3-acetic acid (AUX/IAA) proteins IAA7 and IAA17 and Transport Inhibitor Response 1 (TIR1) auxin co-receptors but is readily outcompeted by IAA. Biolayer interferometry and yeast degradation assays indicated weak "anti-auxin" activity, as oxIAA enhances IAA7-TIR1 interactions while retarding IAA7 and IAA17 degradation. In a low auxin/quiescent interval that precedes auxin-triggered apical hook opening in etiolated seedlings, IAA7 gain-of-function and loss-of-function mutants exhibited early apical hook opening similar to dao1, and application of oxIAA to etiolated dao1 apical hooks partially rescued the phenotype. The weak "anti-auxin" activity of oxIAA during transitional growth is an important reminder of the evolutionary processes that forge adaptive plant growth responses.

Indexed as

ArabidopsisCell MembraneCytosolIndoleacetic AcidsArabidopsis ProteinsDioxygenasesFlowersGene Expression Regulation, PlantOxidation-ReductionPlant Growth RegulatorsPlant RootsArabidopsis ProteinsDioxygenasesindoleacetic acidIndoleacetic AcidsPlant Growth Regulators

Identifiers

PMID40759618
PMCPMC12344411

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.