Evidence map›Paper›PMID 40751928›Full record

ArticleJournal of computational chemistry2025

Enhancing Empirical Energy Functions Using Physics- and Machine Learning-Based Extensions: Structure, Dynamics and Spectroscopy of Modified Benzenes.

Kham Lek Chaton, Markus Meuwly

Abstract read
In one paragraph

Article in Journal of computational chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Kham Lek ChatonDepartment of Chemistry, University of Basel, Basel, Switzerland.
Markus MeuwlyDepartment of Chemistry, University of Basel, Basel, Switzerland.ORCID https://orcid.org/0000-0001-7930-8806

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
6 · The paper itself

Abstract

The effects of replacing individual contributions to an empirical energy function are assessed for halogenated benzenes (X-Bz, X = H, F, Cl, Br) and chlorinated phenols (Cl-PhOH). Introducing electrostatic models based on minimal distributed charges (MDCM) instead of usual atom-centered point charges (PCs) to realistically describe features such as σ-holes yields overestimated hydration free energies unless the van der Waals parameters are reparametrized. Scaling van der Waals ranges by 10% to 20% for three Cl-PhOH and most X-Bz yield results within experimental error bars, which is encouraging, whereas for benzene (H-Bz) PC-based models are sufficient. Replacing the bonded terms by a neural network-trained energy function featuring fluctuating atom-centered PCs also yields qualitatively correct hydration free energies, which can be brought into agreement with experiments within error bars after adaptation of the van der Waals parameters. The infrared spectroscopy of Cl-PhOH is rather well captured by all models, although the ML-based energy function performs somewhat better in the region of the framework modes. The present work finds that refinements of empirical energy functions for targeted applications are a meaningful way toward more quantitative and physics-based simulations. At the same time, empirical energy functions have matured to a remarkable degree, at least for the species considered in the present work.

Indexed as

electrostaticsforce field developmentmachine learning

Identifiers

PMID40751928
PMCPMC12317740

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.