Evidence map›Paper›PMID 40751130›Full record

ArticleBMC microbiology2025

Screening and identification of host factors interacting with the nucleocapsid protein of SARS-CoV-2 omicron variant using the yeast two-hybrid system.

Chunhua Wang, Tingyu Yu, Moyue Xie, Dongang Zhan, Shuaijie Zhang, Wenqi Chai, Jianzhong Zhao, Lijuan Yin, Yang Yang, Liang Shen and 1 more

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Peptide Aptamers: Innovative Design and Applications in Pathogen Detection.Chembiochem : a European journal of chemical biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chunhua Wang *Department of Central Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, 441021, Hubei Province, China.
Tingyu Yu *Department of Central Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, 441021, Hubei Province, China.
Moyue Xie *Department of Central Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, 441021, Hubei Province, China.
Dongang Zhan *Department of Central Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, 441021, Hubei Province, China.
Shuaijie Zhang *Department of Central Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, 441021, Hubei Province, China.
Wenqi ChaiDepartment of Central Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, 441021, Hubei Province, China.
Jianzhong ZhaoDepartment of Clinical Laboratory, Xiangyang No. 1 People's Hospital, Hubei University of Medicine, Xiangyang, 441000, Hubei Province, China.
Lijuan YinState Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Microbiology, Ministry of Education, Tianjin Key Laboratory of Industry Microbiology, National and Local United Engineering Lab of Metabolic Control Fermentation Technology, China International Science and Technology Cooperation Base of Food Nutrition/Safety and Medicinal Chemistry, College of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, China.
Yang YangShenzhen Key Laboratory of Pathogen and Immunity, National Clinical Research Center for Infectious Disease, State Key Discipline of Infectious Disease, Shenzhen Third People's Hospital, Second Hospital Affiliated to Southern University of Science and Technology, Shenzhen, China. young@mail.sustech.edu.cn.
Liang ShenDepartment of Central Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, 441021, Hubei Province, China. shenliang.0829@163.com.
Ying XiaDepartment of Central Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, 441021, Hubei Province, China. xiaying0437@163.com.

Funding

Scientific research project of Xiangyang Central Hospital 2022YZ04
6 · The paper itself

Abstract

backgroundThe nucleocapsid protein (N protein) of SARS-CoV-2 is highly conserved in viral evolution and serves as the primary structural protein in viral infection, being the most abundant in viral particles. The N protein is highly immunogenic and plays a key role in the processes of viral infection and replication, making it of significant research value in both basic studies and clinical applications.

resultsTo further investigate the functions of SARS-CoV-2 N protein, the Matchmaker Gold Yeast Two-Hybrid System was used to identify potential interacting partners of the N protein in human peripheral blood mononuclear cells (PBMCs). Through this approach, we identified 11 host proteins that might interact with the SARS-CoV-2 N protein. We further validated the interaction between the N protein and two host proteins, RNF2 and ARL15, which showed the highest positive clone rates at the cellular level. We also predicted the critical amino acid residues mediating the interaction of the N protein with RNF2 or ARL15. Additionally, we explored the impact of these two host proteins on coronavirus replication. Functional analysis of all the 11 host proteins revealed their involvement in ribosome biogenesis, antigen processing and presentation, as well as various signaling pathways such as JAK-STAT.

conclusionsThis study further enriches the understanding of interactions between the SARS-CoV-2 N protein and host, providing important theoretical insights for the deeper understanding of viral pathogenesis and the development of antiviral strategies.

Indexed as

Coronavirus Nucleocapsid ProteinsCOVID-19SARS-CoV-2Host-Pathogen InteractionsHumansLeukocytes, MononuclearPhosphoproteinsProtein BindingTwo-Hybrid System TechniquesCoronavirus Nucleocapsid Proteinsnucleocapsid phosphoprotein, SARS-CoV-2PhosphoproteinsARL15NucleocapsidRNF2SARS-CoV-2Yeast two-hybrid system

Identifiers

PMID40751130
PMCPMC12315389

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.