Evidence map›Paper›PMID 40748397›Full record

ArticleBiodegradation2025

Whole genome sequence of Arthrobacter sp. from Iloilo City landfill soil unveils potential plastic biodegradation genes.

Jasmine Velo, Christopher Marlowe Caipang, Albert Noblezada, Lorenz Inri Banabatac, Noel Peter Tan, Victor Marco Emmanuel Ferriols

Abstract read
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In one paragraph

Article in Biodegradation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jasmine VeloPhilippine Genome Center Visayas, University of the Philippines, Visayas, 5023, Miagao, Iloilo, Philippines.ORCID 0009-0009-6243-1440
Christopher Marlowe CaipangDivision of Biological Sciences, College of Arts and Sciences, University of the Philippines Visayas, 5023, Miagao, Iloilo, Philippines.ORCID 0000-0001-6356-9753
Albert NoblezadaPhilippine Genome Center Visayas, University of the Philippines, Visayas, 5023, Miagao, Iloilo, Philippines.ORCID 0009-0008-2955-1486
Lorenz Inri BanabatacCenter for Advanced New Materials, Engineering, Emerging Technologies, University of San Agustin, 5000, Iloilo City, Philippines.
Noel Peter TanCenter for Advanced New Materials, Engineering, Emerging Technologies, University of San Agustin, 5000, Iloilo City, Philippines.ORCID 0000-0002-5424-9616
Victor Marco Emmanuel FerriolsPhilippine Genome Center Visayas, University of the Philippines, Visayas, 5023, Miagao, Iloilo, Philippines. vnferriols@up.edu.ph.ORCID 0000-0002-7427-1298

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plastics are synthetic materials that have transformed society in a lot of ways, yet widespread use of these materials has caused a staggering amount of pollution in the environment. Among these plastics, polypropylene and low-density polyethylene are two of the most used plastics for packaging globally. Currently, only two enzymes were characterized for low density polyethylene degradation while no specific enzymes have been confirmed to degrade polypropylene. In this study, one bacterial isolate from landfill soil was assessed for potential polypropylene and low-density polyethylene degradation abilities using gravimetric methods by measuring the initial and final weight of plastic films. Results showed that after 60 days of incubation, a total decrease of 8.04% was observed for polypropylene plastics and 3.13% for low density polyethylene plastics. Whole genome sequencing using Illumina Nextseq™ 1000 generated a total number of 3,746,011 assembled base pairs for Isolate 1 using SPAdes. Phylogenetic tree construction using the Bacterial Pan-Genome Analysis (BPGA) tool revealed close relation of the isolate to Arthrobacter sp. Analysis of the annotated whole genome sequence against the Plastic database revealed 11 putative protein coding genes that encode enzymes with potential to break down plastics.

Indexed as

ArthrobacterGenome, BacterialPlasticsSoil MicrobiologyBiodegradation, EnvironmentalPhylogenyPolyethylenePolypropylenesWaste Disposal FacilitiesWhole Genome SequencingPlasticsPolyethylenePolypropylenesBiodegradationBioinformaticsCellDNAGenomePlastics

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.