ArticleFrontiers in plant science2025
Integrated transcriptome, GWAS, and metabolome revealed the mechanism of seed germination in sorghum.
Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- Prevotella melaninogenica Alleviate Mycoplasma pneumoniae Infection Through the Butyrate Based on Multi-Omic Analysis and Experimental Validation.Chemical biology & drug design · 2026Article
- Germination as a Strategy to Enhance the Bioactivity of Whole Grains: Phytochemical Remodeling and Health Implications.Comprehensive reviews in food science and food safety · 2026Review
- Genome-Wide Association Uncovered SbERF60 Positively Regulates Mesocotyl Length in Sorghum.Plants (Basel, Switzerland) · 2026Article
- Germination-Driven Modulation of Phenolic Compounds in Sorghum: Bioactivity and Gene Expression.Foods (Basel, Switzerland) · 2026Review
- Genome-wide association and haplotype analyses reveal genetic architecture of seed dormancy in grain sorghum with implications for preharvest sprouting tolerance.The plant genome · 2026Article
- Genome-wide analysis and expression profiling ofFrontiers in plant science · 2026Article
- Metabolomic and transcriptomic analyses reveal the mechanisms underlyingFrontiers in genetics · 2026Article
- Integrative genomic and transcriptomic approaches decipher pre-harvest sprouting resistance in rice.Frontiers in plant science · 2025Article
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Authors and funding
11 authors.
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Abstract
Introduction: In sorghum production, pre-harvest sprouting (PHS) is one of the most important problems, and the primary cause of sprouting susceptibility is a low dormancy prior to crop harvest. Methods: To cope with this situation, we conducted transcriptome, metabolome, and genome-wide association studies (GWAS) to understand the mechanism underlying sorghum seed dormancy and germination. Results: We constructed 36 transcriptome libraries from four sorghum materials with contrasting germination abilities at three developmental stages. The Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis based on transcriptome data showed that metabolic pathways, biosynthesis of secondary metabolites, starch and sucrose metabolism, and plant hormone signal transduction are greatly enriched. In plant hormone signal transduction, genes associated with abscisic acid (ABA), gibberellic acid (GA), brassinosteroid (BR), and the auxin signaling pathway are involved in seed germination. GWAS of the 24-h germination rate across 232 cultivars identified four significant SNPs and 31 candidate genes, with Discussion: In summary, our findings demonstrate that ABA signaling, mediated by
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