Evidence map›Paper›PMID 40746274›Full record

ArticleEvolution & development2025

Comparative Embryology and Transcriptomics of Asellus infernus, an Isopod Crustacean From Sulfidic Groundwater.

Haeli J Lomheim, Lizet Reyes Rodas, Devon Price, Serban M Sarbu, Raluca I Băncilă, Cody Carroll, Layla Freeborn, Sheri Sanders, Meredith E Protas

Abstract read
In one paragraph

Article in Evolution & development, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Haeli J LomheimDepartment of Natural Sciences and Mathematics, Dominican University of California, San Rafael, California, USA.
Lizet Reyes RodasDepartment of Natural Sciences and Mathematics, Dominican University of California, San Rafael, California, USA.
Devon PriceDepartment of Natural Sciences and Mathematics, Dominican University of California, San Rafael, California, USA.
Serban M Sarbu"Emil Racoviţă" Institute of Speleology, Department Cluj-Napoca, Cluj-Napoca, Romania.
Raluca I Băncilă"Emil Racoviţă" Institute of Speleology, Department Cluj-Napoca, Cluj-Napoca, Romania.
Cody CarrollDepartment of Mathematics and Statistics, Data Institute, University of San Francisco, San Francisco, California, USA.ORCID 0000-0003-3525-8653
Layla FreebornResearch Computing, Office of Information Technology, The Center for Research Data and Digital Scholarship, University of Colorado Boulder, Boulder, Colorado, USA.ORCID 0000-0002-3299-4666
Sheri SandersDepartment of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, USA.
Meredith E ProtasDepartment of Natural Sciences and Mathematics, Dominican University of California, San Rafael, California, USA.ORCID 0000-0002-9339-324X

Funding

Genetic and functional analysis of eye degeneration in natural populations of a cave-dwelling crustaceanR15EY029499 · NEI · DOMINICAN UNIVERSITY · PI PROTAS, MEREDITH E · 2019 to 2024
$640k
NEI NIH HHS R15 EY029499This work was supported by the National Eye Institute of the National Institutes of Health under Award Number R15EY029499 to M.E.P. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. S.S. and L.F. are supported by the National Center for Genome Analysis Support (NSF ABI-1759906 to Indiana University; NSF ABI-1759914 to the Pittsburgh Supercomputing Center). This work used Bridges-2 through allocation request number BIO210174 from the Extreme Science and Engineering Discovery Environment (XSEDE), supported by the National Science Foundation (Grant number #1548562). This research was funded by Biodiversa+, the European Biodiversity Partnership under the 2021-2022 BiodivProtect joint call for research proposals, co-funded by the European Commission (GA no. 101052342) and with the funding organisations Ministry of Universities and Research (Italy), Agencia Estatal de Investigación-Fundación Biodiversidad (Spain), Fundo Regional para a Ciência e Tecnologia (Portugal), Suomen Akatemia-Ministry of the Environment (Finland), Belgian Science Policy Office (Belgium), Agence Nationale de la Recherche (France), Deutsche Forschungsgemeinschaft e.V. (Germany), Schweizerischer Nationalfonds (Grant no. 31BD30_209583, Switzerland), Fonds zur Förderung der Wissenschaftlichen Forschung (Austria), Ministry of Higher Education, Science and Innovation (Slovenia), and the Executive Agency for Higher Education, Research, Development and Innovation Funding (Romania).
6 · The paper itself

Abstract

Sulfidic caves are harsh and extreme environments characterized by limited oxygen, low pH, and the presence of hydrogen sulfide. Amazingly, animals can live in sulfidic caves, one such animal being Asellus infernus, a representative of the Asellus aquaticus species complex, originating from Movile Cave and from old wells that represent windows of access to a sulfidic groundwater ecosystem located in southeast Romania. Little previous work has been done on lab-reared populations of A. infernus as they have been historically difficult to raise in the lab. Here, we develop resources for A. infernus, examining questions of timing of morphological differences in cave versus surface individuals, whether the environment (lab-bred vs. wild-caught) influenced size characteristics, and the genes and pathways showing differential expression between cave and surface samples. We found that A. infernus did not develop pigmentation embryonically, and juveniles had increased body length and longer antenna II as compared to surface individuals. Furthermore, we found that some of these measures differed between wild-caught and lab-reared juveniles for a given population, indicating that environmental differences can also influence these size characteristics. In addition, differential expression between cave and surface samples and allele-specific expression studies within F1 hybrids identified multiple genes, including those involved in sulfide metabolism and phototransduction. Strikingly, molecular convergence of genes involved in sulfide detoxification was observed between A. infernus and previous work on a fish that lives in both cave and sulfidic environments, Poecilia mexicana. In sum, we were able to develop embryonic and genomic tools for A. infernus, a model for understanding cave adaptation and adaptation to sulfidic environments.

Indexed as

IsopodaTranscriptomeAnimalsCavesEmbryo, NonmammalianGroundwaterSulfidesSulfidesallele‐specific expressioncaveisopodsulfidic water

Identifiers

PMID40746274
PMCPMC12326928

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.