Evidence map›Paper›PMID 40746261›Full record

ArticleJournal of the American Chemical Society2025

Proteomic Tracking Extracellular Vesicle RNA Interactors in Recipient Immune Cells through Orthogonal Labelings.

Zheng Zhang, Zhuojun Luo, Yikai Liu, Subhransu Sekhar Sahoo, Vamara Dembele, Meng-Ju Wu, Nabeel Bardeesy, Fang Huang, Majid Kazemian, Kyle A Cottrell and 1 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zheng ZhangDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States.
Zhuojun LuoDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States.
Yikai LiuDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States.
Subhransu Sekhar SahooDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States.
Vamara DembeleWeldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, United States.
Meng-Ju WuDepartment of Medicine, UMass Chan Medical School, Worcester, Massachusetts 01655, United States.ORCID 0000-0001-6847-7065
Nabeel BardeesyCancer Center, Massachusetts General Hospital, Boston, Massachusetts 02114, United States.
Fang HuangWeldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, United States.
Majid KazemianDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States.
Kyle A CottrellDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States.
W Andy TaoDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0002-5535-5517

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI ANDREW D MESECAR · 1985 to 2026
$43.4M
Ultra-high resolution structural and molecular imaging of cells and tissuesR35GM119785 · NIGMS · PURDUE UNIVERSITY · PI Fang Huang · 2016 to 2026
$4.8M
Dissecting signaling pathways and seeking EV phosphoproteins as novel biomarkers for Alzheimer's DiseaseR01AG064250 · NIA · PURDUE UNIVERSITY · PI TAO, W. ANDY · 2024 to 2024
$386k
NCI NIH HHS P30 CA023168NIA NIH HHS R01 AG064250NIGMS NIH HHS R35 GM119785
6 · The paper itself

Abstract

RNA cargos in extracellular vesicles (EVs) mediate intercellular communication by engaging RNA-binding proteins (RBPs) in recipient cells. Here, we introduce extracellular RNA interactome capture through orthogonal labelings (ERICOL), a targeted cross-linking and quantitative chemical proteomic strategy based on metabolic labeling of RNAs and stable isotope labeling of proteins for systematic profiling of EV RBPs in recipient cells. Time-resolved analysis of tumor-derived EVs in Jurkat T cells revealed dynamic patterns of EV RNA uptake and RBP engagement. Further profiling in primary human CD8+ T cells treated with wild-type or IDH1 mutant intrahepatic cholangiocarcinoma (ICC)-derived EVs uncovered IDH1 mutation-driven alterations in the EV RBP landscape. ERICOL offers a powerful strategy for comprehensive profiling of EV RNA interactome dynamics and provides mechanistic insights into EV-mediated immune modulation.

Indexed as

Extracellular VesiclesProteomicsRNARNA-Binding ProteinsCD8-Positive T-LymphocytesHumansIsotope LabelingJurkat CellsRNARNA-Binding Proteins

Identifiers

PMID40746261
PMCPMC12368845

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.