Evidence map›Paper›PMID 40745370›Full record

ArticleScientific reports2025

Genetic diversity and structure of Asian cowpea germplasm.

Ngozi Paulinus Ofem, Nasrein Mohamed Kamal, Sofie Pearson, Tracey Shatte, David Jordan, Emma Mace, Takayoshi Ishii

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ngozi Paulinus OfemUnited Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama Minami, Tottori, 680-8553, Japan.
Nasrein Mohamed KamalInternational Platform for Dryland Research and Education (IPDRE), Tottori University, 1390 Hamasaka, Tottori, 680-0001, Japan.
Sofie PearsonQueensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Hermitage Research Facility, Warwick, Qld, Australia.
Tracey ShatteQueensland Department of Primary Industries (DPI), Hermitage Research Facility, Warwick, Qld, Australia.
David JordanQueensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Hermitage Research Facility, Warwick, Qld, Australia.
Emma MaceQueensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Hermitage Research Facility, Warwick, Qld, Australia.
Takayoshi IshiiInternational Platform for Dryland Research and Education (IPDRE), Tottori University, 1390 Hamasaka, Tottori, 680-0001, Japan. ishii.t@tottori-u.ac.jp.

Funding

Gates Foundation INV-002955
6 · The paper itself

Abstract

Cowpea (Vigna unguiculata L. Walp., 2n = 2x = 22) is a vital dryland legume crop, renowned for its affordable dietary protein and essential nutrients for humans and animals. Cowpea originated in Africa and spread to various parts of the world through human migration, eventually reaching Asia. However, genetic diversity and structure in Asia cowpea remain poorly understood. This study utilized 6334 SilicoDArT and 14,482 single nucleotide polymorphism (SNP) markers to assess the genetic diversity and population structure of 405 cowpea accessions from 17 different countries, sourced from the National Agriculture and Food Research Organization (NARO) genebank in Japan. We used population structure, principal component analysis, discriminant analysis of principal components, and phylogenetic tree analysis to group the accessions into two main genetic populations. The accessions were further classified into six subgroups of African and Asian populations, corresponding to the geographical origins of the accessions. South Asian accessions showed the highest differentiation, with Nepalese accessions forming a distinct group along with Japanese accessions, highlighting that the rich genetic resources preserved within these regions may harbor valuable traits for breeding. In contrast, Southeast Asian and West African accessions exhibited low to moderate differentiation, suggesting recently shared genetic ancestry. AMOVA demonstrated that most genetic variation existed within accessions, while variation between populations was minimal. These findings highlight the rich genetic potential within the Asian cowpea germplasm, particularly in Nepalese and Japanese accessions. This study provides critical insights into breeding strategies aimed at enhancing the adaptability and productivity of cowpea in diverse environments.

Indexed as

Genetic VariationSeedsVignaAsiaGenetics, PopulationJapanPhylogenyPolymorphism, Single NucleotidePrincipal Component AnalysisDArT-SeqDisseminationDryland cropPopulation structurePulseVariation

Identifiers

PMID40745370
PMCPMC12313949

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.