Evidence map›Paper›PMID 40745177›Full record

ArticleNature communications2025

A cytokine-based designer enzyme with an abiological multinuclear metal center exhibits intrinsic and extrinsic catalysis.

Akiko Ueno, Fumiko Takida, Tomoki Kita, Takuro Ishii, Tomoki Himiyama, Takuya Mabuchi, Yasunori Okamoto

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Akiko Ueno *Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Sendai, Miyagi, Japan.
Fumiko Takida *Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Sendai, Miyagi, Japan.
Tomoki KitaGraduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan.
Takuro IshiiFrontier Research Institute for Interdisciplinary Sciences, Tohoku University, Sendai, Miyagi, Japan.ORCID http://orcid.org/0000-0002-7411-3919
Tomoki HimiyamaMolecular Biosystems Research Institute (MolBiS), National Institute of Advanced Industrial Science and Technology, Ikeda, Osaka, Japan. t-himiyama@aist.go.jp.ORCID http://orcid.org/0000-0001-5252-1834
Takuya MabuchiInstitute of Fluid Science, Tohoku University, Sendai, Miyagi, Japan. mabuchi@tohoku.ac.jp.ORCID http://orcid.org/0000-0001-8253-4273
Yasunori OkamotoFrontier Research Institute for Interdisciplinary Sciences, Tohoku University, Sendai, Miyagi, Japan. okamoto@ims.ac.jp.ORCID http://orcid.org/0000-0002-2442-6079

Funding

MEXT | Japan Science and Technology Agency (JST) JPMJAX1913MEXT | Japan Science and Technology Agency (JST) JPMJFR212HMEXT | Japan Society for the Promotion of Science (JSPS) 21H05118MEXT | Japan Society for the Promotion of Science (JSPS) 24K08609MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR22A4
6 · The paper itself

Abstract

A designer enzyme consisting of an abiological molecule incorporated into a natural protein has been developed as an exceptionally chemoselective catalyst, highlighting that the internal space of proteins is highly beneficial for enhancing catalytic performance. However, other features of proteins have received less attention in designer enzymes, for e.g., their use as ligands to construct abiological (multinuclear) metal centers and their intrinsic functions that have often been traded off for a new function. Here, grafting a synthetic trinuclear zinc complex inside a human cytokine macrophage migration inhibitory factor (MIF) scaffold using solely amino-acid side chains leads to a designer multi-metalloenzyme with extrinsic and intrinsic functions. The crystal structure of the designer tri-zinc enzyme verifies the accuracy of our design process based on geometry optimizations and quantum-chemical calculations. The extrinsic catalytic performance of this designer enzyme is of the highest class and comparable to that of previously reported designer zinc hydrolases. Importantly, an intrinsic function of MIF, i.e., its tautomerase activity, is maintained in this designer tri-zinc enzyme. Considering that cytokines are originally expressed in response to in vivo events, this cytokine-based designer metalloenzyme holds promising potential as a synthetic biological tool for the self-adaptive regulation of life phenomena.

Indexed as

CytokinesIntramolecular OxidoreductasesMacrophage Migration-Inhibitory FactorsZincBiocatalysisCatalysisCrystallography, X-RayHumansModels, MolecularProtein EngineeringCytokinesIntramolecular OxidoreductasesMacrophage Migration-Inhibitory FactorsMIF protein, humanZinc

Identifiers

PMID40745177
PMCPMC12313933

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.