Evidence map›Paper›PMID 40742150›Full record

ArticlemBio2025

A critical residue in a conserved RBD epitope determines neutralization breadth of pan-sarbecovirus antibodies with recurring YYDRxxG motifs.

Saskia C Stein, George Ssebyatika, Tim Benecke, Luisa Ströh, Manoj K Rajak, Benjamin Vollmer, Sarah Menz, Ja-Yun Waldmann, Sarah N Tipp, Okechukwu Ochulor and 22 more

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

Saskia C Stein *Institute of Virology, Hannover Medical School, Hannover, Germany.ORCID 0000-0002-0550-7543
George Ssebyatika *Institute of Biochemistry, Center of Structural and Cell Biology in Medicine, University of Lübeck, Lübeck, Germany.
Tim BeneckeCentre for Structural Systems Biology, Hamburg, Germany.
Luisa StröhInstitute of Virology, Hannover Medical School, Hannover, Germany.
Manoj K RajakInstitute of Virology, Hannover Medical School, Hannover, Germany.
Benjamin VollmerCentre for Structural Systems Biology, Hamburg, Germany.
Sarah MenzInstitute of Virology, Hannover Medical School, Hannover, Germany.
Ja-Yun WaldmannInstitute of Virology, Hannover Medical School, Hannover, Germany.
Sarah N TippInstitute of Virology, Hannover Medical School, Hannover, Germany.
Okechukwu OchulorInstitute of Virology, Hannover Medical School, Hannover, Germany.
Elisabeth HeroldInstitute of Biochemistry, Center of Structural and Cell Biology in Medicine, University of Lübeck, Lübeck, Germany.
Britta SchwarzlohInstitute of Biochemistry, Center of Structural and Cell Biology in Medicine, University of Lübeck, Lübeck, Germany.
Doris MutschallInstitute of Biochemistry, Center of Structural and Cell Biology in Medicine, University of Lübeck, Lübeck, Germany.
Jasmin ZischkeInstitute of Virology, Hannover Medical School, Hannover, Germany.
Talia SchneiderInstitute of Virology, Hannover Medical School, Hannover, Germany.
Imke HinrichsInstitute of Biochemistry, Center of Structural and Cell Biology in Medicine, University of Lübeck, Lübeck, Germany.
Rainer BlasczykInstitute of Transfusion Medicine and Transplant Engineering, Hannover Medical School, Hannover, Germany.
Hannah Kleine-WeberFaculty of Biology and Psychology, German Primate Center, Leibniz Institute for Primate Research, University of Göttingen, Göttingen, Germany.
Markus HoffmannFaculty of Biology and Psychology, German Primate Center, Leibniz Institute for Primate Research, University of Göttingen, Göttingen, Germany.
Florian KleinLaboratory of Experimental Immunology, Institute of Virology, University of Cologne, Cologne, Germany.ORCID 0000-0003-1376-1792
Franziska K KaiserResearch Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
Mariana Gonzalez-HernandezResearch Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
Federico ArmandoDepartment of Pathology, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
Malgorzata CiurkiewiczDepartment of Pathology, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
Georg BeythienDepartment of Pathology, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
Stefan PöhlmannFaculty of Biology and Psychology, German Primate Center, Leibniz Institute for Primate Research, University of Göttingen, Göttingen, Germany.
Wolfgang BaumgärtnerDepartment of Pathology, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
Kay GruenewaldCentre for Structural Systems Biology, Hamburg, Germany.
Albert OsterhausResearch Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
Thomas F SchulzInstitute of Virology, Hannover Medical School, Hannover, Germany.ORCID 0000-0001-8792-5345
Thomas KreyInstitute of Virology, Hannover Medical School, Hannover, Germany.ORCID 0000-0002-4548-7241
Guido HansenInstitute of Biochemistry, Center of Structural and Cell Biology in Medicine, University of Lübeck, Lübeck, Germany.ORCID 0000-0003-3737-5749

Funding

Bundesministerium für Bildung und Forschung (BMBF) COVIM 01KX2021, COVIM 2.0 01KX2121Bundesministerium für Bildung und Forschung (BMBF) RAPID 01KI1723GBundesministerium für Bildung und Forschung (BMBF) RAPID 01KI2006DCOVID-19-Research Network of the State of Lower Saxony COFONI 7FF22 and 4FT21Deutsche Forschungsgemeinschaft 439226007Deutsche Forschungsgemeinschaft (DFG) Germany's Excellence Strategy - EXC 2155 - project number 390874280Deutsche Forschungsgemeinschaft (DFG) Graduate Program 2485 VIPERDeutsche Forschungsgemeinschaft (DFG) SFB 900 project number 158989968 - within project B10Ministry of Science and Culture of Lower Saxony in Germany 14-76103-184 CORONA-12/20Ministry of Science and Culture of Lower Saxony in Germany 14-76103-184 CORONA-15/20Ministry of Science and Culture of Lower Saxony in Germany 14-76403-184
6 · The paper itself

Abstract

The emergence of pandemic coronaviruses remains a global health concern, highlighting the need for broadly neutralizing antibodies (bnAbs) that can target multiple sarbecoviruses. In this study, we isolated and characterized a novel antibody, pT1679, that demonstrates exceptional neutralization breadth. The antibody prevented infection with SARS-CoV-2 variants of concern, such as Omicron BA.1, and effectively neutralized pseudotyped viruses displaying S proteins from many SARS-CoV-2 variants and various bat and pangolin sarbecoviruses, including both SARS-CoV-like and SARS-CoV-2-like viruses. In addition, pT1679 reduced the viral load in the lung of infected Syrian hamsters and prevented the severe lung pathology typical for SARS-CoV-2 infections. The cryo-electron microscopy structure of pT1679 in complex with SARS-CoV-2 S revealed that the antibody employs a YYDRxxG motif to recognize a highly conserved epitope on the RBD. Through detailed structural analysis, mutagenesis studies, and binding assays, we identified RBD residue 384 as a critical determinant of antibody recognition. Structure-function analyses of several related bnAbs, such as COVA1-16, allowed for the classification of YYDRxxG antibodies into two distinct groups that differ in neutralization breadth. Our findings provide crucial insights into the molecular basis of broad

Indexed as

Antibodies, NeutralizingAntibodies, ViralBroadly Neutralizing AntibodiesEpitopesSARS-CoV-2Spike Glycoprotein, CoronavirusAmino Acid MotifsAnimalsChiropteraCOVID-19CricetinaeCryoelectron MicroscopyHumansMesocricetusNeutralization TestsAntibodies, NeutralizingAntibodies, ViralBroadly Neutralizing AntibodiesEpitopesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2neutralization escapeneutralizing antibodyreceptor-binding domainsarbecovirusSARS-CoV-2

Identifiers

PMID40742150
PMCPMC12421856

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.