Evidence map›Paper›PMID 40741630›Full record

ReviewJournal of microbiology (Seoul, Korea)2025

Metabolic engineering of Saccharomyces cerevisiae for efficient utilization of pectin-rich biomass.

Dahye Lee, Fransheska Semidey, Luping Xu, Eun Joong Oh

Abstract readReview
In one paragraph

Review in Journal of microbiology (Seoul, Korea), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Dahye LeeDepartment of Food Science, Purdue University, West Lafayette, IN 47907, USA.
Fransheska SemideyDepartment of Food Science, Purdue University, West Lafayette, IN 47907, USA.
Luping XuDepartment of Food Science, Purdue University, West Lafayette, IN 47907, USA.
Eun Joong OhDepartment of Food Science, Purdue University, West Lafayette, IN 47907, USA.

Funding

Purdue University
6 · The paper itself

Abstract

Pectin-rich biomass, derived from fruit and citrus processing waste, presents a promising yet underutilized resource for sustainable biofuel and biochemical production. Its low lignin content and high concentrations of fermentable sugars, including D-galacturonic acid, L-arabinose, and D-xylose, make it an attractive feedstock. Unlike lignocellulosic biomass, pectin-rich hydrolysates require milder pretreatment, improving sugar recovery efficiency. However, industrial strains such as Saccharomyces cerevisiae exhibit strong glucose preference, limiting the efficient co-fermentation of mixed sugars. While prior reviews have broadly addressed lignocellulosic biomass utilization, this mini-review uniquely centers on the specific metabolic challenges and opportunities associated with pectin-rich feedstocks. In addition to incorporating established strategies for the co-utilization of cellobiose and xylose, we highlight recent advances that allow S. cerevisiae to metabolize carbon sources specifically from pectin-rich biomass, such as L-arabinose and D-galacturonic acid-monomers not prevalent in traditional lignocellulosic biomass. By integrating discussions on sugar transport engineering, redox balancing, and pathway optimization, this review offers a comprehensive framework to overcome glucose repression and support efficient co-fermentation of carbon sources from conventional and pectin-rich biomass. Drawing on these advances, we outline practical strategies to enhance fermentation performance and expand the valorization of food processing residues in biomanufacturing.

Indexed as

Metabolic EngineeringPectinsSaccharomyces cerevisiaeArabinoseBiofuelsBiomassCellobioseFermentationGlucoseHexuronic AcidsLigninXyloseArabinoseBiofuelsCellobiosegalacturonic acidGlucoseHexuronic AcidsLigninlignocellulosePectinsXyloseglucose repressionmetabolic engineeringpectin-rich biomassSaccharomyces cerevisiae

Identifiers

PMID40741630
PMCPMC13577057

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.