Evidence map›Paper›PMID 40736902›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

Seaside to Bedside: Assembly in Research for Emerging Human Fungal Pathogen Candida auris.

Hugh Gifford, Duncan Wilson, Johanna Rhodes, Rhys A Farrer

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hugh GiffordMRC Center for Medical Mycology, University of Exeter, Exeter, UK.
Duncan WilsonMRC Center for Medical Mycology, University of Exeter, Exeter, UK.
Johanna RhodesDepartment of Medical Microbiology, Radboudumc, Nijmegen, The Netherlands, GA.
Rhys A FarrerMRC Center for Medical Mycology, University of Exeter, Exeter, UK. R.Farrer@exeter.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Discovery science in Medical Mycology requires a range of tools, from optimized experimental models to near-patient clinical applications, with the common goal of reducing morbidity and mortality from fungal diseases. Assembly tools underpin bioinformatic discovery across this spectrum of research, setting the scene for genomic enquiry, and promising an unprecedented wave of breakthrough in mechanistic understanding of pathobiology that could unearth critical diagnostic and treatment advances. This chapter examines the investigation of Candida auris, an emerging human fungal pathogen, in the context of clinic detection and treatment of infection. In the laboratory, we cover the use of the Arabian Killifish (AK) as a non-model organism to understand transcriptional responses to both host and pathogen during infection.

Indexed as

CandidaCandida aurisCandidiasisAnimalsComputational BiologyHost-Pathogen InteractionsHumansAphanius disparArabian killifishAssemblyCandida aurisHuman fungal pathogensMetagenomicsMetatranscriptomicsPangenomicsTranscriptomics

Identifiers

PMID40736902

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.