Evidence map›Paper›PMID 40736339›Full record

ArticleThe ISME journal2025

Decoding the SCFA-CpxAR-OMP axis as a dietary checkpoint against antimicrobial resistance transmission across gut-environment interfaces.

Rong Tan, Yuanyuan Song, Jing Yin, Danyang Shi, Haibei Li, Tianjiao Chen, Yating Wang, Min Jin, Junwen Li, Dong Yang

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Rong TanTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Yuanyuan SongTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Jing YinTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Danyang ShiTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Haibei LiTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Tianjiao ChenTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Yating WangTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Min JinTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Junwen LiTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.
Dong YangTianjin Key Laboratory of Risk Assessment and Control for Environment and Food Safety, State Key Laboratory of Pathogen and Biosecurity, Military Medical Sciences Academy, No. 1 Dali Road, Tianjin 300050, China.ORCID 0000-0002-2842-3895

Funding

National Natural Science Foundation of China 41831287Natural Science Foundation of Tianjin 19JCZDJC39900
6 · The paper itself

Abstract

The transmission of environmental-originated antibiotic resistance genes (ARGs) into the human gut via the food chain or water has transformed the intestinal tract into a critical reservoir and dissemination hub for ARGs. Moreover, human to human oral-fecal transmission is likely to intensify this dissemination cycle. Gut microbiota harboring ARGs not only drive clinical infections but also exacerbate diverse pathologies, including inflammatory bowel disease and metabolic disorders. Furthermore, amplified ARGs can re-enter environmental compartments through fecal discharge, establishing a persistent bidirectional "gut-environment" resistance transmission cycle. In this study, we demonstrate that short-chain fatty acids (SCFAs), key metabolites derived from gut microbiota, potently suppress the horizontal transfer of ARGs. A high-fiber diet reshaped gut microbial composition, elevating SCFA production by 1.6-fold and reducing ARGs dissemination rates by up to 5.8-fold in vivo. The anti-conjugation activity of SCFAs was further validated through in vitro observations and in vivo models. Mechanistically, we propose the CpxAR-OMP pathway as a previously uncharacterized regulatory axis, wherein SCFAs inhibit ARGs transfer by downregulating conjugation-associated promoters (trfAp and trbBp) and disrupting membrane function via CpxAR-mediated suppression of OMPs expression. To our knowledge, this work provides comprehensive evidence of SCFAs in curbing exogenous ARGs dissemination within the gut ecosystem, deciphers the CpxAR-OMP-driven molecular mechanism, and proposes dietary fiber intervention as a feasible strategy to mitigate antimicrobial resistance across the "One-Health" continuum.

Indexed as

Bacterial ProteinsDrug Resistance, BacterialFatty Acids, VolatileGastrointestinal MicrobiomeAnimalsAnti-Bacterial AgentsBacteriaDietDietary FiberFecesGene Transfer, HorizontalHumansMiceAnti-Bacterial AgentsBacterial ProteinsDietary FiberFatty Acids, VolatileARGsCpxAR-OMP pathwaygut microbiotahorizontal gene transferSCFAs

Identifiers

PMID40736339
PMCPMC12416819

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.