Evidence map›Paper›PMID 40735816›Full record

ArticleChembiochem : a European journal of chemical biology2025

Selective Lysine Ubiquitination Using Activated Phenol Esters.

Halana C Vlaming, Yara Huppelschoten, Rayman T N Tjokrodirijo, Peter A van Veelen, Francesca D'Amico, Kim B Jensen, Jens Buchardt, Thomas E Nielsen, Bhavesh Premdjee, Gerbrand J van der Heden van Noort

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Halana C VlamingDept. Cell and Chemical Biology, Leiden University Medical Centre, 2333 ZC, Leiden, The Netherlands.ORCID https://orcid.org/0000-0003-0971-159X
Yara HuppelschotenDept. Cell and Chemical Biology, Leiden University Medical Centre, 2333 ZC, Leiden, The Netherlands.ORCID https://orcid.org/0000-0002-3336-9846
Rayman T N TjokrodirijoCentre for Proteomics and Metabolomics, Leiden University Medical Centre, 2300 RC, Leiden, The Netherlands.ORCID https://orcid.org/0009-0007-4878-8385
Peter A van VeelenCentre for Proteomics and Metabolomics, Leiden University Medical Centre, 2300 RC, Leiden, The Netherlands.ORCID https://orcid.org/0000-0002-7898-9408
Francesca D'AmicoDept. Cell and Chemical Biology, Leiden University Medical Centre, 2333 ZC, Leiden, The Netherlands.ORCID https://orcid.org/0000-0002-7104-2158
Kim B JensenGlobal Research Technologies, Novo Nordisk A/S, Novo Nordisk Research Park, DK-2760, Måløv, Denmark.ORCID https://orcid.org/0000-0002-5621-1558
Jens BuchardtGlobal Research Technologies, Novo Nordisk A/S, Novo Nordisk Research Park, DK-2760, Måløv, Denmark.
Thomas E NielsenGlobal Research Technologies, Novo Nordisk A/S, Novo Nordisk Research Park, DK-2760, Måløv, Denmark.ORCID https://orcid.org/0000-0001-8700-1951
Bhavesh PremdjeeGlobal Research Technologies, Novo Nordisk A/S, Novo Nordisk Research Park, DK-2760, Måløv, Denmark.ORCID https://orcid.org/0000-0001-6967-9857
Gerbrand J van der Heden van NoortDept. Cell and Chemical Biology, Leiden University Medical Centre, 2333 ZC, Leiden, The Netherlands.ORCID https://orcid.org/0000-0001-5955-6431

Funding

European Research Council 101087582European Union's Horizon 2020 research and innovation program under the Marie Skłodowska-Curie 765445NWO VI.Vidi.192.011
6 · The paper itself

Abstract

Ubiquitination of target proteins is an essential post-translational modification influencing a wide variety of cellular processes. Herein, the use of a novel water-soluble acylation reagent based on the 2,4-dichloro-6-sulfonic acid phenol ester of ubiquitin is described for efficient and selective ubiquitin modification of peptides. Under alkaline conditions, this reagent is swift and regioselective toward lysine acylation, while at neutral pH it shows loss of regioselectivity and is able to acylate both lysine and N-terminal modification at reduced speeds. As proof of concept, a model peptide is utilized to demonstrate this strategy, proving to be successful. Then the ubiquitination of a synthetic protein called Fau gene encoded Ubiquitin-like protein (FUBI) is performed under alkaline conditions followed by tandem MS analysis, proving that the selective lysine ubiquitination works to prepare protein-protein conjugates.

Indexed as

EstersLysinePhenolsUbiquitinAcylationUbiquitinationEstersLysinePhenolsUbiquitinactivated esterlysinepeptideubiquitination

Identifiers

PMID40735816
PMCPMC12447373

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.