Evidence map›Paper›PMID 40734829›Full record

ArticlePlant diversity2025

Evaluating the utility of deep genome skimming for phylogenomic analyses: A case study in the species-rich genus

Zhi-Qiong Mo, Chao-Nan Fu, Alex D Twyford, Pete M Hollingsworth, Ting Zhang, Jun-Bo Yang, De-Zhu Li, Lian-Ming Gao

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plant diversity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. PhytoKeys · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhi-Qiong MoState Key Laboratory of Plant Diversity and Specialty Crops, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China.
Chao-Nan FuGermplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omits, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China.
Alex D TwyfordInstitute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FL, Scotland, UK.
Pete M HollingsworthRoyal Botanic Garden Edinburgh, Edinburgh EH3 5LR, Scotland, UK.
Ting ZhangGermplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omits, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China.
Jun-Bo YangGermplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omits, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China.
De-Zhu LiGermplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omits, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China.
Lian-Ming GaoState Key Laboratory of Plant Diversity and Specialty Crops, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deep genome skimming (DGS) has emerged as a promising approach to recover orthologous nuclear genes for large-scale phylogenomic analyses. However, its reliability with low DNA quality and quantity typical of archival specimens, such as herbarium material, remains largely unexplored. We used

Indexed as

Deep genome skimmingDegraded DNAHerbarium specimensNon-targeted exon-flanking regionsPhylogenomicsTarget enrichment

Identifiers

PMID40734829
PMCPMC12302500

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.