Evidence map›Paper›PMID 40733376›Full record

ArticlePlants (Basel, Switzerland)2025

Genebank Management Through Microsatellite Markers: A Case Study in Two Italian Peach Germplasm Collections.

Elisa Vendramin, Cássia da Silva Linge, Daniele Bassi, Sabrina Micali, Giorgiana Chietera, Maria Teresa Dettori, Valeria Aramini, Jessica Giovinazzi, Igor Pacheco, Laura Rossini and 1 more

Abstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Management and Genetic Diversity of an ItalianInternational journal of molecular sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Elisa VendraminResearch Centre for Olive, Fruit and Citrus Crops (CREA-OFA), Council for Agricultural Research and Economics (CREA), Via di Fioranello, 52, 00134 Roma, Italy.
Cássia da Silva LingeDepartment of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy, University of Milan, Via Celoria 2, 20133 Milano, Italy.ORCID 0000-0003-4760-1359
Daniele BassiDepartment of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy, University of Milan, Via Celoria 2, 20133 Milano, Italy.ORCID 0000-0002-8966-3534
Sabrina MicaliResearch Centre for Olive, Fruit and Citrus Crops (CREA-OFA), Council for Agricultural Research and Economics (CREA), Via di Fioranello, 52, 00134 Roma, Italy.
Giorgiana ChieteraParco Tecnologico Padano, Via Einstein, Loc. Cascina Codazza, 26900 Lodi, Italy.
Maria Teresa DettoriResearch Centre for Olive, Fruit and Citrus Crops (CREA-OFA), Council for Agricultural Research and Economics (CREA), Via di Fioranello, 52, 00134 Roma, Italy.ORCID 0000-0003-0528-2855
Valeria AraminiResearch Centre for Olive, Fruit and Citrus Crops (CREA-OFA), Council for Agricultural Research and Economics (CREA), Via di Fioranello, 52, 00134 Roma, Italy.
Jessica GiovinazziResearch Centre for Olive, Fruit and Citrus Crops (CREA-OFA), Council for Agricultural Research and Economics (CREA), Via di Fioranello, 52, 00134 Roma, Italy.
Igor PachecoDepartment of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy, University of Milan, Via Celoria 2, 20133 Milano, Italy.ORCID 0000-0001-5057-0464
Laura RossiniDepartment of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy, University of Milan, Via Celoria 2, 20133 Milano, Italy.ORCID 0000-0001-6509-9177
Ignazio VerdeResearch Centre for Olive, Fruit and Citrus Crops (CREA-OFA), Council for Agricultural Research and Economics (CREA), Via di Fioranello, 52, 00134 Roma, Italy.ORCID 0000-0002-9139-955X

Funding

Ministero dell'Agricoltura, della sovranità alimentare e delle foreste DM14999/7303/08
6 · The paper itself

Abstract

Two germplasm collections, comprising 1026 peach accessions located in Italy, were analyzed with 12 simple sequence repeat (SSR) markers. SSR reactions were performed using the multiplex-ready PCR protocol, and 147 alleles were amplified with an average of 12 alleles per locus. BPPCT001 was the most informative marker displaying the highest discrimination power (0.734). The observed heterozygosity showed an average of 0.45 alleles per locus, lower than expected (0.61). The fixation index (F) values were positive in all loci, with an average of 0.27 alleles per locus, suggesting the presence of endogamy. The DNA fingerprinting data allowed the discrimination of 80.95% of the analyzed accessions. If we exclude known sport mutations, known synonymies, and cultivars with the same pedigree, 161 accessions are mislabeled, with an error rate of 16.56% within or between collections. Population structure analysis revealed three subpopulations: modern peach cultivars, modern nectarine cultivars, and a third group mainly comprising traditional peach cultivars. The results obtained in this work will be useful to efficiently manage Genebank, reducing unwanted redundancy, synonyms and homonyms, mislabeling, and spelling errors, as well as identifying parents in controlled crosses.

Indexed as

cultivar identificationgenetic relationshipgenetic resourcesPrunus persica (L.) Batschsimple sequence repeats (SSR)

Identifiers

PMID40733376
PMCPMC12300406

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.