Evidence map›Paper›PMID 40729381›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Structural basis for the evolution of a domesticated group II intron-like reverse transcriptase to function in host cell DNA repair.

Seung Kuk Park, Mo Guo, Jennifer L Stamos, Wantae Kim, Sidae Lee, Y Jessie Zhang, Alan M Lambowitz

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Beyond Short Microhomologies: Mismatch-Compatible Pol θ-Mediated DNA Damage Repair.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  5. Identification of candidate nucleomodulins in ESKAPE bacteria -Frontiers in cellular and infection microbiology · 2026
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Seung Kuk Park *Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712.
Mo Guo *Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712.
Jennifer L StamosDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712.
Wantae KimDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712.
Sidae LeeDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712.
Y Jessie ZhangDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712.ORCID 0000-0002-9360-5388
Alan M LambowitzDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712.ORCID 0000-0001-6036-2423

Funding

Group II Intron and Related Reverse TranscriptasesR35GM136216 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ALAN M. LAMBOWITZ · 2020 to 2026
$6.0M
Elucidating the SCP4 pathway as a multi-catalytic signaling dependency in acute myeloid leukemiaR01CA281106 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Christopher Vakoc, Yan Jessie Zhang · 2023 to 2026
$2.9M
Deciphering the phosphorylation pattern of RNA polymerase II for eukaryotic transcriptionR35GM148356 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Yan Jessie Zhang · 2023 to 2026
$2.3M
NCI NIH HHS R01 CA281106NIGMS NIH HHS R35 GM136216NIGMS NIH HHS R35 GM148356Welch Foundation (The Welch Foundation) F-1607
6 · The paper itself

Abstract

A previous study found that a bacterial group II intron-like reverse transcriptase (G2L4 RT) evolved to function in double-strand break repair (DSBR) via microhomology-mediated end-joining (MMEJ) and that a mobile group II intron-encoded RT has a basal DSBR activity that uses conserved structural features of non-long terminal repeat (non-LTR)-retroelement RTs. Here, we determined G2L4 RT apoenzyme and snap-back DNA synthesis structures revealing unique structural adaptations that optimized its cellular function in DSBR. These included an RT3a structure that stabilizes the apoenzyme in an inactive conformation until encountering a DNA substrate; a longer N-terminal extension/RT0-loop with conserved residues that together with a modified active site favors strand annealing; and a conserved dimer interface that localizes G2L4 RT homodimers to DSBR sites with both monomers positioned for MMEJ. Our findings reveal how an RT can function in DNA repair and suggest ways of optimizing related RTs for genome engineering applications.

Indexed as

DNA RepairEvolution, MolecularIntronsRNA-Directed DNA PolymeraseCatalytic DomainDNA Breaks, Double-StrandedModels, MolecularRNA-Directed DNA PolymeraseDNA repairLINE-1 elementsretroelementsretrotransposonsreverse transcriptase evolution

Identifiers

PMID40729381
PMCPMC12337344

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.