Evidence map›Paper›PMID 40725191›Full record

ArticleInternational journal of molecular sciences2025

Transcriptomic Profiling of Paired Primary Tumors and CNS Metastases in Breast Cancer Reveals Immune Modulation Signatures.

Ana Julia Aguiar de Freitas, Muriele Bertagna Varuzza, Stéphanie Calfa, Rhafaela Lima Causin, Vinicius Duval da Silva, Cristiano de Pádua Souza, Márcia Maria Chiquitelli Marques

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ana Julia Aguiar de FreitasMolecular Oncology Research Center, Teaching and Research Institute, Barretos Cancer Hospital, Barretos 14784-400, SP, Brazil.ORCID 0000-0002-9677-2093
Muriele Bertagna VaruzzaMolecular Oncology Research Center, Teaching and Research Institute, Barretos Cancer Hospital, Barretos 14784-400, SP, Brazil.ORCID 0000-0002-4482-6440
Stéphanie CalfaMolecular Oncology Research Center, Teaching and Research Institute, Barretos Cancer Hospital, Barretos 14784-400, SP, Brazil.ORCID 0000-0002-5278-8720
Rhafaela Lima CausinMolecular Oncology Research Center, Teaching and Research Institute, Barretos Cancer Hospital, Barretos 14784-400, SP, Brazil.ORCID 0000-0003-1749-9736
Vinicius Duval da SilvaBarretos Cancer Hospital, Barretos 14784-400, SP, Brazil.ORCID 0000-0003-3515-0263
Cristiano de Pádua SouzaBarretos Cancer Hospital, Barretos 14784-400, SP, Brazil.ORCID 0000-0002-6412-8041
Márcia Maria Chiquitelli MarquesMolecular Oncology Research Center, Teaching and Research Institute, Barretos Cancer Hospital, Barretos 14784-400, SP, Brazil.ORCID 0000-0001-5616-6710

Funding

Sao Paulo Research Foundation (FAPESP) 2018/19741-7Sao Paulo Research Foundation (FAPESP) 2020/07773-9
6 · The paper itself

Abstract

Breast cancer is a leading cause of central nervous system (CNS) metastases in women, often associated with poor prognosis and limited therapeutic options. However, molecular differences between primary tumors and CNS metastases remain underexplored. We aimed to characterize transcriptomic differences between primary breast tumors and matched CNS metastases and identify immune-related biomarkers associated with metastatic progression and patient outcomes. Transcriptomic profiling was based on 11 matched FFPE sample pairs (primary tumor and CNS metastasis). Paired formalin-fixed paraffin-embedded (FFPE) samples from primary tumors (T1) and CNS metastases (T2) were analyzed using the NanoString nCounter

Indexed as

Breast NeoplasmsCentral Nervous System NeoplasmsGene Expression ProfilingTranscriptomeBiomarkers, TumorFemaleGene Expression Regulation, NeoplasticHumansMiddle AgedPrognosisBiomarkers, Tumorbreast cancerCNS metastasesgene expressionimmune biomarkersNanoStringpersonalized oncology

Identifiers

PMID40725191
PMCPMC12294877

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.