Evidence map›Paper›PMID 40723824›Full record

ReviewBiomolecules2025

Effects of Nitro-Oxidative Stress on Biomolecules: Part 2-Reactive Molecular Dynamics Simulations.

Zhaonan Chai, Yawei Feng, Tong Zhao, Xiaolong Wang, Maksudbek Yusupov, Maryam Ghasemitarei, Tayebeh Ghorbi, Annemie Bogaerts, Yuantao Zhang

Abstract readReview
In one paragraph

Review in Biomolecules, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Zhaonan ChaiSchool of Electrical Engineering, Shandong University, Jinan 250061, China.
Yawei FengSchool of Electrical Engineering, Shandong University, Jinan 250061, China.
Tong ZhaoSchool of Electrical Engineering, Shandong University, Jinan 250061, China.ORCID 0000-0003-0523-4466
Xiaolong WangSchool of Electrical Engineering, Shandong University, Jinan 250061, China.
Maksudbek YusupovInstitute of Fundamental and Applied Research, National Research University TIIAME, Tashkent 100000, Uzbekistan.ORCID 0000-0003-4591-858X
Maryam GhasemitareiDepartment of Applied Physics, Aalto University, FI-00076 Espoo, Finland.
Tayebeh GhorbiLaboratory of Experimental Biophysics, Centre for Advanced Technologies, Tashkent 100174, Uzbekistan.
Annemie BogaertsResearch Group PLASMANT, Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium.ORCID 0000-0001-9875-6460
Yuantao ZhangSchool of Electrical Engineering, Shandong University, Jinan 250061, China.ORCID 0000-0002-1051-5062

Funding

National Natural Science Foundation of China 12375201, 52177224, 52477146, 52107172
6 · The paper itself

Abstract

In this review article, statistical mechanisms of oxidative modification reactions in various organic compounds under the influence of reactive oxygen species (ROS) generated by cold atmospheric plasma (CAP) are investigated and analyzed based on reactive molecular dynamics (MD) simulations. As an efficient and hygienic advanced oxidation technology, CAP demonstrates tremendous potential in fields such as biomedicine and environmental protection. Through simulations, this paper provides a detailed analysis of the interaction mechanisms between ROS and components of biological tissues and environmental toxins. In this paper, we review the reactions involving four major ROS (OH radicals, O atoms, O3 molecules, and H2O2 molecules) and organic compounds, including proteins, DNA, polysaccharides, fatty acids, antibiotics, and mycotoxins. Atomic-level analysis reveals various oxidative modification reactions induced by ROS and their resulting products, including dehydrogenation reactions, bond-formation reactions, oxygen-addition reactions, and bond-cleavage reactions. Additionally, the study elucidates the role of active functional groups in various organic compounds, the presence of special elements, and the specific reactive nature of H2O2. Furthermore, the influence of different ROS species and concentrations on reaction types is explored, aiming to provide a solid theoretical foundation for the application of CAP technology in biomedicine and environmental remediation.

Indexed as

Molecular Dynamics SimulationOxidative StressReactive Oxygen SpeciesDNAHydrogen PeroxideOxidation-ReductionPlasma GasesProteinsDNAHydrogen PeroxidePlasma GasesProteinsReactive Oxygen Species52.65.Kj52.77.Fv52.80Pibiological tissuescold atmospheric plasmaenvironmental toxinsreactive MD simulationreactive oxygen species

Identifiers

PMID40723824
PMCPMC12292654

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.