Evidence map›Paper›PMID 40721711›Full record

ArticleScientific reports2025

Agent-based simulation of cortical microtubule band movement in arabidopsis zygotes.

Tomonobu Nonoyama, Zichen Kang, Hikari Matsumoto, Sakumi Nakagawa, Minako Ueda, Satoru Tsugawa

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tomonobu NonoyamaDepartment of Mechanical Engineering, Faculty of Systems Science and Technology, Akita Prefectural University, Yurihonjo, 015-0055, Akita, Japan.
Zichen KangDepartment of Mechanical Engineering, Faculty of Systems Science and Technology, Akita Prefectural University, Yurihonjo, 015-0055, Akita, Japan.
Hikari MatsumotoGraduate School of Life Sciences, Tohoku University, Sendai, 980-8578, Miyagi, Japan.
Sakumi NakagawaGraduate School of Life Sciences, Tohoku University, Sendai, 980-8578, Miyagi, Japan.
Minako UedaGraduate School of Life Sciences, Tohoku University, Sendai, 980-8578, Miyagi, Japan.
Satoru TsugawaDepartment of Mechanical Engineering, Faculty of Systems Science and Technology, Akita Prefectural University, Yurihonjo, 015-0055, Akita, Japan. tsugawa@akita-pu.ac.jp.

Funding

Grant-in-Aid for Early-Career Scientists JP22K15135Grant-in-Aid for Scientific Research (B) JP23H02494Grants-in-Aid for Scientific Research on Innovative Areas JP19H05670International Leading Research JP22K21352Japan Society for the Promotion of Science JP20K15832JSPS KAKENHI JP25K18499JSPS KAKENHI JP25KJ0540the Japan Science and Technology Agency JPMJCR2121the Toray Science Foundation 20-6102
6 · The paper itself

Abstract

Arabidopsis thaliana zygotes form a circumferential cortical microtubule (CMT) band that moves upward along the longitudinal axis of the cylindrical cell; however, how and why this CMT band moves remain unknown. Based on several recently proposed feedback mechanisms of CMT reorientation, we hypothesized that a directional cue (DC) changes CMT orientation. We constructed an agent-based simulation model with a DC to observe what happens during CMT formation using different parameters. We determined that the output CMT band can become larger than the input DC zone and identified two types of self-organization processes depending on the parameters used. Furthermore, using well-defined parameters that form a static CMT band, we artificially changed the position of the input DC zone, revealing that CMT band movement requires a DC to move at an appropriate speed.

Indexed as

ArabidopsisMicrotubulesZygoteComputer SimulationModels, BiologicalAgent-based modelArabidopsis zygoteCortical microtubulesOrientational orderSelf-organization

Identifiers

PMID40721711
PMCPMC12304275

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.