Evidence map›Paper›PMID 40721419›Full record

ArticleNature communications2025

Environmental cues in different host niches shape the survival fitness of Staphylococcus aureus.

JuOae Chang, ChaeYoung Lee, Inseo Kim, Jihyeon Kim, Ji-Hoon Kim, Taegwan Yun, David C Hooper, Suzanne Walker, Wonsik Lee

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. D-alanine aminotransferase (Dat) promotesbioRxiv : the preprint server for biology · 2026
    Article
  5. Metabolic reprogramming promotesMicrobiology (Reading, England) · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Host-directed microRNA-based intervention against intracellularFrontiers in cellular and infection microbiology · 2026
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

JuOae Chang *School of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea.
ChaeYoung Lee *School of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea.
Inseo KimSchool of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea.
Jihyeon KimSchool of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea.
Ji-Hoon KimSchool of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea.
Taegwan YunSchool of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea.
David C HooperDivision of Infectious Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Suzanne WalkerDepartment of Microbiology, Harvard Medical School, Boston, MA, USA. suzanne_walker@hms.harvard.edu.ORCID http://orcid.org/0000-0002-0545-914X
Wonsik LeeSchool of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea. wonsik.lee@skku.edu.ORCID http://orcid.org/0000-0001-9707-4513

Funding

Technical Mother Machine CoreP01AI083214 · NIAID · SCHEPENS EYE RESEARCH INSTITUTE · PI David C Hooper · 2009 to 2026
$39.4M
NIAID NIH HHS P01 AI083214
6 · The paper itself

Abstract

The ability of Staphylococcus aureus to adapt and thrive in diverse host niches adds to the challenge in combating this ubiquitous pathogen. While extensive research has been pursued on the adaptive mechanisms of methicillin-resistant S. aureus (MRSA) in various infection models, a comprehensive analysis of its fitness across different host niches is lacking. In this study, we employ transposon sequencing to analyze the adaptive strategies of MRSA in various infection niches. Our analysis encompasses a cell model that mimics an intracellular niche, human blood, which represents a major extracellular environment as well as a major intermediary route encountered by bacteria during systemic infection, and a male murine sepsis model that recapitulates intra-organ environments. Our findings reveal substantial differences in the genetic determinants essential for bacterial survival in intracellular and blood environments. Moreover, we show that each organ imposes unique growth constraints, thus fostering heterogeneity within the mutant population that can enter and survive in each organ of the mouse. By comparing genes important for survival across all examined host environments, we identify 27 core genes that represent potential therapeutic targets for treating S. aureus infections. Additionally, our findings aid in understanding how bacteria adapt to diverse host environments.

Indexed as

Host-Pathogen InteractionsMethicillin-Resistant Staphylococcus aureusStaphylococcal InfectionsStaphylococcus aureusAdaptation, PhysiologicalAnimalsDisease Models, AnimalDNA Transposable ElementsHumansMaleMiceMice, Inbred C57BLSepsisDNA Transposable Elements

Identifiers

PMID40721419
PMCPMC12304399

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.