Evidence map›Paper›PMID 40720534›Full record

ReviewChemical reviews2025

A Computational Perspective to Intermolecular Interactions and the Role of the Solvent on Regulating Protein Properties.

Joel Mieres-Perez, Yasser Almeida-Hernandez, Wolfram Sander, Elsa Sanchez-Garcia

Abstract readReview
In one paragraph

Review in Chemical reviews, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Joel Mieres-PerezChair of Computational Bioengineering, Department of Biochemical and Chemical Engineering, TU Dortmund University, 44227 Dortmund, Germany.
Yasser Almeida-HernandezChair of Computational Bioengineering, Department of Biochemical and Chemical Engineering, TU Dortmund University, 44227 Dortmund, Germany.ORCID 0000-0001-9832-3534
Wolfram SanderChair of Organic Chemistry II, Ruhr-Universität Bochum, D-44801 Bochum, Germany.ORCID 0000-0002-1640-7505
Elsa Sanchez-GarciaChair of Computational Bioengineering, Department of Biochemical and Chemical Engineering, TU Dortmund University, 44227 Dortmund, Germany.ORCID 0000-0002-9211-5803

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intermolecular interactions play a key role in determining and tuning the structure and function of proteins. Following a simplified conventional scheme, molecular interactions are often classified as strong (long-range), typically driven by ionic contacts and salt bridges, or as weak (short-range), such as hydrophobic interactions. The reality is more complex, with classical strong interactions having weak contributions and vice versa. The interaction network regulating the properties of biomolecular systems such as proteins and their media goes beyond a single sort of contribution, and instead it is characterized by the interplay between several forces of diverse nature. In this review, we discuss, via selected examples, state of the art methodologies and applications of computational techniques to explore the role of intermolecular interactions, with emphasis on solvent effects on protein folding, enzymatic activity, and protein-peptide binding.

Indexed as

ProteinsSolventsHumansHydrophobic and Hydrophilic InteractionsProtein BindingProtein FoldingProteinsSolvents

Identifiers

PMID40720534
PMCPMC12355720

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.