Evidence map›Paper›PMID 40719916›Full record

ArticleWorld journal of microbiology & biotechnology2025

Genomic features of plant growth-promoting Ochrobactrum intermedium GH3, an endophyte associated with flatsedge (Cyperus sp.) native to Hochiminh City, Vietnam.

Phuc Hoang Bui, Duy-Phuong Pham, Thi-Viet Nguyen, Thuy-Hien Nguyen, Nhat-Tan Le-Nguyen, Tam Dinh Le Vo, Trung-Dung Huynh-Ngoc, Truc-Thanh Tran, Thu Huynh

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Article in World journal of microbiology & biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Phuc Hoang Bui *Faculty of Applied Technology, School of Technology, Van Lang University, Ho Chi Minh City, Vietnam.
Duy-Phuong Pham *Department of Biotechnology, Faculty of Chemical Engineering, University of Technology (HCMUT), 268 Ly Thuong Kiet, Ward 14, District 10, Ho Chi Minh City, Viet Nam.
Thi-Viet NguyenDepartment of Biotechnology, Faculty of Chemical Engineering, University of Technology (HCMUT), 268 Ly Thuong Kiet, Ward 14, District 10, Ho Chi Minh City, Viet Nam.
Thuy-Hien NguyenDepartment of Biotechnology, Faculty of Chemical Engineering, University of Technology (HCMUT), 268 Ly Thuong Kiet, Ward 14, District 10, Ho Chi Minh City, Viet Nam.
Nhat-Tan Le-NguyenDepartment of Biotechnology, Faculty of Chemical Engineering, University of Technology (HCMUT), 268 Ly Thuong Kiet, Ward 14, District 10, Ho Chi Minh City, Viet Nam.
Tam Dinh Le VoDepartment of Biotechnology, Faculty of Chemical Engineering, University of Technology (HCMUT), 268 Ly Thuong Kiet, Ward 14, District 10, Ho Chi Minh City, Viet Nam.
Trung-Dung Huynh-NgocFaculty of Pharmacy and Nursing, Tay Do University, Can Tho City, Vietnam.
Truc-Thanh TranDepartment of Biotechnology, Faculty of Chemical Engineering, University of Technology (HCMUT), 268 Ly Thuong Kiet, Ward 14, District 10, Ho Chi Minh City, Viet Nam.
Thu HuynhDepartment of Biotechnology, Faculty of Chemical Engineering, University of Technology (HCMUT), 268 Ly Thuong Kiet, Ward 14, District 10, Ho Chi Minh City, Viet Nam. huynh_thu@hcmut.edu.vn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study investigated the plant growth-promoting (PGP) characteristics of culturable endophytic bacteria associated with a rhizomatous perennial flatsedge (Cyperus sp.) native to Hochiminh City, Vietnam. Among the six bacteria isolated, strain GH3 demonstrated the highest potency in solubilizing phosphate and producing ammonia and IAA. Genomic analysis identified strain GH3 as Ochrobactrum intermedium, showing 97.87% ANI and 86.85% alignment to GTDB reference databases. Functional annotation revealed GH3's capabilities in secondary metabolism, iron acquisition, and osmotic stress tolerance. It exhibited potential phosphate solubilization (51.33 mg/L), ammonium (2.66 mg/L), siderophore (23.50%), and IAA (12.56 mg/L) production under stress conditions. The application of strain GH3 influenced growth in rice and tomato. In rice, SL were enhanced in DT8 (27%) and ST25 (54%). Leaf emergence was stable in rice DT8 and tomato, but increased by 28.2% in rice ST25. LRN was increased in rice DT8 (34.9%) and tomato (67.2%), with no change in rice ST25. PRL extended moderately in tomato (16.9%) and rice ST25 (15.2%), but not in rice DT8, while LRL decreased in rice DT8 (-10.9%) and ST25 (-31.4%). Moreover, improvement in biomass parameters emphasized GH3's potential in biomass enhancement with species-specific effects. This study highlights the promising PGP potential of endophytic O. intermedium GH3, which could aid sustainable agriculture amid climate change. It is the first investigation into O. intermedium isolated from Cyperus species, and the first report of O. intermedium in Vietnam, offering valuable contributions to our understanding of microbial interactions within Vietnam's unique flora.

Indexed as

CyperusEndophytesGenome, BacterialOchrobactrumAmmoniaGenomicsIndoleacetic AcidsOryzaPhosphatesPhylogenyPlant DevelopmentPlant Growth RegulatorsRNA, Ribosomal, 16SSiderophoresSoil MicrobiologyVietnamAmmoniaindoleacetic acidIndoleacetic AcidsPhosphatesPlant Growth RegulatorsRNA, Ribosomal, 16SSiderophoresClimate changeEndophytic bacteriaOchrobactrum intermediumPlant growth-promoting propertiesStress tolerance

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.